View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4879-Insertion-1 (Length: 1141)
Name: NF4879-Insertion-1
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879-Insertion-1 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 878; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 878; E-Value: 0
Query Start/End: Original strand, 8 - 1019
Target Start/End: Complemental strand, 4711391 - 4710384
Alignment:
| Q |
8 |
gtgagtggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711391 |
gtgagtggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaa |
4711292 |
T |
|
| Q |
108 |
tattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711291 |
tattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaac |
4711192 |
T |
|
| Q |
208 |
tagagggaacaagagcaaatagagagatagtagggtaattttagtgtgaaatttttcgtttatggattttgccatagttgtgttgtgtgagaatagagtg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || ||||||||| |
|
|
| T |
4711191 |
tagagggaacaagagcaaatagagagatagtagggtaattttagtgtgaaatttttcgtttatggagtttgccatagttatgt-----gaaaatagagtg |
4711097 |
T |
|
| Q |
308 |
aagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcacttatttattgttatatatacattacattaagaagtagaagggaaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711096 |
aagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcatttatttattgttatatatacattacattaagaagtagaagggaaat |
4710997 |
T |
|
| Q |
408 |
ttgtgtgaaacaacactagagacttgtcatgaaatagactactttgaaatggtcataatgatttagcaaaccaattccaaatagatctagcatacccaca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710996 |
ttgtgtgaaacaacactagagacttgtcatgaaatagactactttgaaatggtcataatgatttagcaaaccaattccaaatagatctagcatacccaca |
4710897 |
T |
|
| Q |
508 |
ttcaaacataatgtgtcgactcgttttcagtagccttaagacgcaagctgcagattagcagccacattcaatcttgaaattaatctcaaccgataatatg |
607 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710896 |
ttcaaacataatgtgttgactcgttttcagtagccttaagacacaagctgcagattagcagccacattcaatcttgaaattaatctcaaccgataatatg |
4710797 |
T |
|
| Q |
608 |
attcgaatctatttggtaaaaaatgttgattccggtcatgattcattatttgaatcacctaagatttttcgtttaatatgggaactattaccacttctga |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710796 |
attcgaatctatttggtaaaaaatgttgattccagtcatgattcattatttgaatcacctaagatttttcgtttaatatgggaactattaccacttctga |
4710697 |
T |
|
| Q |
708 |
tactgaggtctctgcacttaagaaaaaagggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattattac |
807 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710696 |
tactgaggtctctgtacttaaaaaaaaagggaagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattattac |
4710597 |
T |
|
| Q |
808 |
aacactggtagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgtaatg |
907 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4710596 |
aacactgatagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagtacaacaattattaggaaataattgaattagagctgtaa-c |
4710498 |
T |
|
| Q |
908 |
taactaagtgccagaaatgctcttaagagaggaatgcatgtgattgacacgggagctcttctaagtattctatcca-gggagc-accctagatg--aatt |
1003 |
Q |
| |
|
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| | || |
|
|
| T |
4710497 |
ta--tgagtgccagaaatgctcttaagaggggaatgcatgtgattgacacgggagctcctctaagtattctatccaggggagcaaccctagatggaattt |
4710400 |
T |
|
| Q |
1004 |
tcattatgcttggagg |
1019 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4710399 |
tcattatgcttggagg |
4710384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 4845319 - 4844863
Alignment:
| Q |
8 |
gtgagtggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaa |
107 |
Q |
| |
|
|||| |||||| | ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845319 |
gtgaatggaatttggatattggaaagggaattaggagatgatttaaaagatggatttgtggtttttggttcaatgaaggtaaagagatttgagttatcaa |
4845220 |
T |
|
| Q |
108 |
tattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaac |
207 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4845219 |
tattatcaccaatccaaattcgtttatctaaggcaacattgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataac |
4845120 |
T |
|
| Q |
208 |
tagagggaacaagagcaaatagagagatagtagggtaattttagtgtgaaatttttcgtttatggattttgccatagttgtgttgtgtgagaatagagtg |
307 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
4845119 |
tagagggaacaaaaccaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggagtttggcatagttgtgttgtgtgagaatagagtg |
4845020 |
T |
|
| Q |
308 |
aagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcacttatttattgttatatatacattacattaagaagtagaagggaaat |
407 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4845019 |
aagaagactagattttgtttttcttgttgattgttaggatgcttgaagttgcacttatttattgttatatatacattagattgagaagtagaagggaaat |
4844920 |
T |
|
| Q |
408 |
ttgtgtg-aaacaacactagagacttgtcatgaaatagactactttgaaatggtcata |
464 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4844919 |
ttgtgtgaaaacaacactaga-ctttgtcatgaaatagactactttgaaatggtcata |
4844863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 50 - 290
Target Start/End: Original strand, 4637684 - 4637924
Alignment:
| Q |
50 |
ttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgt |
149 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
4637684 |
ttaaaagatgggtttgtggtttttggttcaatgaaagtaaagagatttttgttattaatattatcaccaacccaaattcgtttatctaaggcagtattgt |
4637783 |
T |
|
| Q |
150 |
ttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaatttt |
249 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |||| ||||||| | | ||||| |
|
|
| T |
4637784 |
cggttaaggagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactaaagggaaaagtagcaaaaagagggatagtatgctgatttt |
4637883 |
T |
|
| Q |
250 |
agtgtgaaatttttcgtttatggattttgccatagttgtgt |
290 |
Q |
| |
|
|||| || |||| ||||||||| |||||||||| ||||| |
|
|
| T |
4637884 |
tgtgtaaatgtttttgtttatggagtttgccatagctgtgt |
4637924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 51 - 283
Target Start/End: Original strand, 4654327 - 4654559
Alignment:
| Q |
51 |
taagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtt |
150 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
4654327 |
taagagatgggttcgtggtttttggttcaatgaaagtaaagatatttttgttatcaatattctcaccaatccaaattcgtttatctaaggtagtagtgtc |
4654426 |
T |
|
| Q |
151 |
tgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaatttta |
250 |
Q |
| |
|
|||| | ||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||| | | ||||| |
|
|
| T |
4654427 |
tgttagggagccacaatcgatagctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcattttt |
4654526 |
T |
|
| Q |
251 |
gtgtgaaatttttcgtttatggattttgccata |
283 |
Q |
| |
|
|||| || |||| ||||||||| ||||||||| |
|
|
| T |
4654527 |
gtgtaaatgtttttgtttatggagtttgccata |
4654559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 4673505 - 4673776
Alignment:
| Q |
22 |
gatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatatt---atcacca |
118 |
Q |
| |
|
|||||| || |||||||||||| || | |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
4673505 |
gatatttgagagggaattaggttgtgttgtaagagatgggtatgtggtttttggttcaatgaaagtaaagagatttgtgttattaatattattatcacca |
4673604 |
T |
|
| Q |
119 |
acccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaaca |
218 |
Q |
| |
|
||||| ||||| |||| |||| || | ||||||||||| | |||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
4673605 |
acccacattcggttatcgaaggtagcattgtttgttgaggaaccacaattgatggctaaattgtaaattggtttgtatgaggtagcaactagagggaaca |
4673704 |
T |
|
| Q |
219 |
agagcaaatagagagatagtagggtaattttagtgtgaaatttttcgtttatggattttgccatagttgtgt |
290 |
Q |
| |
|
|||||||| ||| | ||||||||| ||||| |||| | ||||| ||||||||| |||||||||| ||||| |
|
|
| T |
4673705 |
agagcaaaatgagcggtagtagggtgatttttgtgtaattttttttgtttatggagtttgccatagctgtgt |
4673776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 51 - 286
Target Start/End: Complemental strand, 4696442 - 4696210
Alignment:
| Q |
51 |
taagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtt |
150 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||| |||| ||||||| |||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
4696442 |
taagagatgtgtttgtggtttttggttcattgaaggaaaagagttttgtgttatcattattatcaccaacccatattcgtttgtcgaagg---tagtgtc |
4696346 |
T |
|
| Q |
151 |
tgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaatttta |
250 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||| ||||||||| ||| | |||||| |
|
|
| T |
4696345 |
tgatgaggagccacaattgatggctaaattgtaaatagggtcgtatgaggtagcaactagagggaacaatagcaaaatgagagatagcaggatgatttta |
4696246 |
T |
|
| Q |
251 |
gtgtgaaatttttcgtttatggattttgccatagtt |
286 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
4696245 |
gtgtgaaattttttgtttctggagtttgccatagtt |
4696210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 4783139 - 4782934
Alignment:
| Q |
8 |
gtgagtggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaa |
107 |
Q |
| |
|
|||| |||||| | |||||| || |||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
4783139 |
gtgaatggaatttggatatttgagagggaattaggttttgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaa |
4783040 |
T |
|
| Q |
108 |
tattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaac |
207 |
Q |
| |
|
| |||||| ||||||||||||| | ||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4783039 |
tgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaaatagcaat |
4782940 |
T |
|
| Q |
208 |
tagagg |
213 |
Q |
| |
|
|||||| |
|
|
| T |
4782939 |
tagagg |
4782934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 33 - 314
Target Start/End: Original strand, 4644505 - 4644781
Alignment:
| Q |
33 |
gggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgact |
132 |
Q |
| |
|
|||| ||| |||||| |||| ||||||| || |||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4644505 |
gggatttaagtgatgttttaggagatggattagtggtttttggttcaatgaaagtaaagagttttgtgttatcattattatcaccaacccaaattcgact |
4644604 |
T |
|
| Q |
133 |
atctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagaga |
232 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| | ||||||| ||||||| || ||||||||| |||| | ||||||||||| |||||| |||| |
|
|
| T |
4644605 |
atctaaggcagtagtgttcgttgaggagccacaactaatggctatattgtaaattggattgtatgaggtagctagtagagggaacagtagcaaaatgaga |
4644704 |
T |
|
| Q |
233 |
gatagtagggtaattttagtgtgaaatttttcgtttatggattttgccatagttgtgttgtgtgagaatagagtgaagaaga |
314 |
Q |
| |
|
|| |||| | | ||||| |||| | ||||| |||||||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
4644705 |
gaaagtatgctgatttttgtgtaattttttttgtttatggtgtttgccatagttg-----tgtgagaagagagtgaagaaga |
4644781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 4815544 - 4815363
Alignment:
| Q |
32 |
agggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgac |
131 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| | |
|
|
| T |
4815544 |
agggaattaggttttgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaatgttatcaacaacccaaattcgtc |
4815445 |
T |
|
| Q |
132 |
tatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagg |
213 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
4815444 |
catcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaactagcaattagagg |
4815363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 4864718 - 4865079
Alignment:
| Q |
13 |
tggaatatcgatattggaaagggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatatta |
112 |
Q |
| |
|
|||||| ||||| || ||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
4864718 |
tggaatttcgatgtttgaagcggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatatta |
4864817 |
T |
|
| Q |
113 |
tcaccaacccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgta------tgagttagcaa |
206 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||| |||||||| |||||||||| || |||||||| |||| ||| ||||| | |
|
|
| T |
4864818 |
tcaccaacccaaattcgtttatctaag---gtagtatttgttgaggagccacaaccgatggctaaactgaaatcagggctgtatgctattgatttagcta |
4864914 |
T |
|
| Q |
207 |
ctagagggaacaagagcaaatagagagatagtagggtaattttagtgtgaaatttttcgtttatggattttgccatagttgtgttgtgtgagaatagagt |
306 |
Q |
| |
|
||| | || || || ||| ||||||||||||||| |||||||||| || ||| | |||||| || ||||||||| |||||||||||| || || |
|
|
| T |
4864915 |
ctaaaaaaaagaataggaaaaggagagatagtagggtgattttagtgtaaagtttcttgtttatcgagtttgccata-----gttgtgtgagaagagggt |
4865009 |
T |
|
| Q |
307 |
gaagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcacttatttattgttata |
376 |
Q |
| |
|
||||||| | |||| |||| || |||||||| || | ||||| |||||| || ||||||||| ||||| |
|
|
| T |
4865010 |
gaagaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacatttatttattcttata |
4865079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 696 - 904
Target Start/End: Complemental strand, 12340316 - 12340100
Alignment:
| Q |
696 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
790 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| |||||||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
12340316 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
12340217 |
T |
|
| Q |
791 |
aagatgcttattatt-acaacact--ggtagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
887 |
Q |
| |
|
||||||| || |||| ||||| || | |||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
12340216 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
12340117 |
T |
|
| Q |
888 |
atcgaattagagctgta |
904 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
12340116 |
atagagttagagctgta |
12340100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 696 - 904
Target Start/End: Complemental strand, 48939095 - 48938879
Alignment:
| Q |
696 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
790 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| |||||||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
48939095 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
48938996 |
T |
|
| Q |
791 |
aagatgcttattatt-acaacact--ggtagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
887 |
Q |
| |
|
||||||| || |||| ||||| || | |||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
48938995 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
48938896 |
T |
|
| Q |
888 |
atcgaattagagctgta |
904 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
48938895 |
atagagttagagctgta |
48938879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 696 - 904
Target Start/End: Original strand, 6948605 - 6948821
Alignment:
| Q |
696 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
790 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| |||||||||||| ||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
6948605 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggttcggtactcgatgtagtttttccaccaggg |
6948704 |
T |
|
| Q |
791 |
aagatgcttattatt-acaacact--ggtagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
887 |
Q |
| |
|
||||||| || |||| ||||| || | |||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
6948705 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
6948804 |
T |
|
| Q |
888 |
atcgaattagagctgta |
904 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
6948805 |
atagagttagagctgta |
6948821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 737 - 904
Target Start/End: Original strand, 26158819 - 26158989
Alignment:
| Q |
737 |
ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattatt-acaacact--ggtagttcaaggtcgagata |
833 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||||||| || | ||||||||| || |||| ||||| || | |||||||||||||||||| |
|
|
| T |
26158819 |
ggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccagggaagatgcctaatatttacaacgctctgatagttcaaggtcgagata |
26158918 |
T |
|
| Q |
834 |
ttgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgta |
904 |
Q |
| |
|
|| || ||| ||||||| ||||| ||||||| |||||||||||||||||||||| || |||||| |||| |
|
|
| T |
26158919 |
ctgttggtcaagaaattaacgtaacttgtgaagtacaacaattattaggaaataatagagttagagttgta |
26158989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 696 - 904
Target Start/End: Complemental strand, 12336130 - 12335914
Alignment:
| Q |
696 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
790 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| |||||||||||| |||||||||||| | || ||| ||||||||| |||| || |
|
|
| T |
12336130 |
taccacttcagatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccgatactcgatatagtttttccactaggg |
12336031 |
T |
|
| Q |
791 |
aagatgcttattatt-acaacact--ggtagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
887 |
Q |
| |
|
||||||| || |||| ||||| || | |||||||||||| ||||| || || |||| ||||||||||||| ||||||| ||| ||| |||||||||||| |
|
|
| T |
12336030 |
aagatgcctaatatttacaacgctctgatagttcaaggtcaagatactgttggccaagaaattaatgtaacttgtgaagtacagcaaatattaggaaata |
12335931 |
T |
|
| Q |
888 |
atcgaattagagctgta |
904 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
12335930 |
atagagttagagctgta |
12335914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 4663524 - 4663715
Alignment:
| Q |
48 |
atttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagt |
147 |
Q |
| |
|
||||||||||||| ||| | |||||||| |||| ||| | |||||| | || ||||||| ||||||||||||||||||||| || || ||||| | |
|
|
| T |
4663524 |
atttaagagatggattttttgtttttggctcaaggaaagaaaagagttctgtgttatcattattatcaccaacccaaattccttcgtccgagtcagtatt |
4663623 |
T |
|
| Q |
148 |
gtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagta |
239 |
Q |
| |
|
|||| | | | |||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
4663624 |
gtttatatcggaaccacaactgatggctaaattgtaaattgggttgtatgaggtagcaattagagggaacaatagcaaaatgagagatagta |
4663715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 737 - 904
Target Start/End: Original strand, 19679079 - 19679249
Alignment:
| Q |
737 |
ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattatt-acaacact--ggtagttcaaggtcgagata |
833 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||||||||||| || | ||||||||| || |||| ||||| || | |||||||||||||||||| |
|
|
| T |
19679079 |
ggacgtatcacgcaaataattggtccggtacttgatgtagtttttccaccagggaagatgcctaatatttacaacgctctgatagttcaaggtcgagata |
19679178 |
T |
|
| Q |
834 |
ttgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgta |
904 |
Q |
| |
|
|| || |||| ||||||| ||||| ||||||| |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
19679179 |
ctgttggccaagaaattaacgtaacttgtgaagtacaacaattattaggaaataatagagttagagctgta |
19679249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 696 - 904
Target Start/End: Complemental strand, 18189484 - 18189268
Alignment:
| Q |
696 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
790 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| |||||||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
18189484 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
18189385 |
T |
|
| Q |
791 |
aagatgcttattatt-acaacact--ggtagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
887 |
Q |
| |
|
||||||| || |||| ||||| || | |||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
18189384 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
18189285 |
T |
|
| Q |
888 |
atcgaattagagctgta |
904 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
18189284 |
atagagttagagctgta |
18189268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 737 - 904
Target Start/End: Complemental strand, 2550237 - 2550067
Alignment:
| Q |
737 |
ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattatt-acaacact--ggtagttcaaggtcgagata |
833 |
Q |
| |
|
|||||||||| | |||||||||||| |||| ||||||||||||| || | ||||||||| || |||| ||||| || | |||||||||||||||||| |
|
|
| T |
2550237 |
ggacgtatcatgcaaataattggtccggtactcgatgtagtttttccaccagggaagatgcctaatatttacaacgctctgatagttcaaggtcgagata |
2550138 |
T |
|
| Q |
834 |
ttgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgta |
904 |
Q |
| |
|
|| || |||| ||||||| ||||| ||||||| ||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
2550137 |
ctgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaataatagagttagagctgta |
2550067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 696 - 904
Target Start/End: Original strand, 13239445 - 13239661
Alignment:
| Q |
696 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggacgtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
790 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| |||||||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
13239445 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
13239544 |
T |
|
| Q |
791 |
aagatgcttattatt-acaacact--ggtagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
887 |
Q |
| |
|
||||||| || |||| ||||| || | |||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
13239545 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
13239644 |
T |
|
| Q |
888 |
atcgaattagagctgta |
904 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
13239645 |
atagagttagagctgta |
13239661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 845 - 904
Target Start/End: Complemental strand, 253645 - 253586
Alignment:
| Q |
845 |
caaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgta |
904 |
Q |
| |
|
||||||||||| || ||||| | |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
253645 |
caaattaatgtgacttgtgaggtacaacaattattaggaaataatagagttagagctgta |
253586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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