View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4879-Insertion-10 (Length: 375)

Name: NF4879-Insertion-10
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4879-Insertion-10
NF4879-Insertion-10
[»] chr6 (11 HSPs)
chr6 (163-374)||(25481124-25481328)
chr6 (7-101)||(26055577-26055671)
chr6 (7-101)||(26048497-26048590)
chr6 (7-101)||(26069666-26069759)
chr6 (7-101)||(26142517-26142610)
chr6 (7-79)||(26075569-26075641)
chr6 (7-107)||(25481381-25481487)
chr6 (168-236)||(25579330-25579399)
chr6 (164-236)||(25538142-25538214)
chr6 (7-50)||(25579424-25579466)
chr6 (7-45)||(27531662-27531700)
[»] chr2 (3 HSPs)
chr2 (331-374)||(23381375-23381418)
chr2 (331-367)||(13499476-13499512)
chr2 (342-374)||(29878836-29878868)
[»] chr5 (1 HSPs)
chr5 (331-369)||(20024145-20024183)
[»] chr7 (1 HSPs)
chr7 (331-374)||(10975741-10975784)
[»] chr3 (1 HSPs)
chr3 (331-374)||(22438716-22438759)
[»] chr1 (2 HSPs)
chr1 (338-374)||(33864238-33864274)
chr1 (338-374)||(33916648-33916684)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 374
Target Start/End: Complemental strand, 25481328 - 25481124
Alignment:
Q  163 ggtctacgaaacttccatactacttccgtcattaccgttcaactttttggacaaaacataaataaataaataaaggtgttttaatacaagtcaattctga 262  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||  |||  |||| |||||     
T  25481328 ggtctacgaaacttccttactacttccgtcattaccgttcaactttttggacaaaacttaaataaa----taaaggtgtttt--tacgggtcatttctgg 25481235  T
Q  263 ttttgcttccgtaattannnnnnnnnatatccgtcctagtaatttgaaggnnnnnnnatttatccacggtaaaatctttatggcatcaaattataaaatt 362  Q
    |||||||||| ||||||         ||||||||||||||||||||||||       |||||||||||||||||  |||||||||| |||||| ||||||    
T  25481234 ttttgcttccttaatta-ttatttttatatccgtcctagtaatttgaaggtttttttatttatccacggtaaaaattttatggcattaaattacaaaatt 25481136  T
Q  363 tatggtattttc 374  Q
    ||||||||||||    
T  25481135 tatggtattttc 25481124  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 26055671 - 26055577
Alignment:
Q  7 aacttccttgcaacatcctatagccgtgtggaccaatcacagagcagatatcgttgcactaccacctcttcttgctgatatcttgaatgtggtta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26055671 aacttccttgcaacatcctatagccgtgtggaccaatcacagagtagatatcgttgcactaccacctcttcttgctgatatcttaaatgtggtta 26055577  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 26048590 - 26048497
Alignment:
Q  7 aacttccttgcaacatcctatagccgtgtggaccaatcacagagcagatatcgttgcactaccacctcttcttgctgatatcttgaatgtggtta 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26048590 aacttccttgcaacatcctatagc-gtgtggaccaatcacagagtagatatcgttgcactaccacctcttcttgctgatatcttaaatgtggtta 26048497  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 26069759 - 26069666
Alignment:
Q  7 aacttccttgcaacatcctatagccgtgtggaccaatcacagagcagatatcgttgcactaccacctcttcttgctgatatcttgaatgtggtta 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26069759 aacttccttgcaacatcctatagc-gtgtggaccaatcacagagtagatatcgttgcactaccacctcttcttgctgatatcttaaatgtggtta 26069666  T

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Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 26142610 - 26142517
Alignment:
Q  7 aacttccttgcaacatcctatagccgtgtggaccaatcacagagcagatatcgttgcactaccacctcttcttgctgatatcttgaatgtggtta 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26142610 aacttccttgcaacatcctatagc-gtgtggaccaatcacagagtagatatcgttgcactaccacctcttcttgctgatatcttaaatgtggtta 26142517  T

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Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 26075641 - 26075569
Alignment:
Q  7 aacttccttgcaacatcctatagccgtgtggaccaatcacagagcagatatcgttgcactaccacctcttctt 79  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26075641 aacttccttgcaacatcctatagccgtgtggaccaatcacagagtagatatcgttgcactaccacctcttctt 26075569  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 25481487 - 25481381
Alignment:
Q  7 aacttccttgcaacatcctatagccg------tgtggaccaatcacagagcagatatcgttgcactaccacctcttcttgctgatatcttgaatgtggtt 100  Q
    ||||||||||||||||||||||||        ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25481487 aacttccttgcaacatcctatagcgtgtggactgtggaccaatcagagagtagatatcgttgcactaccacctcttcttgctgatatcttgaatgtggtt 25481388  T
Q  101 atcatgc 107  Q
    |||||||    
T  25481387 atcatgc 25481381  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 25579399 - 25579330
Alignment:
Q  168 acgaaacttccatactacttccgtcatt-accgttcaactttttggacaaaacataaataaataaataaa 236  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  25579399 acgaaacttccttactacgtccgtcatttaccgttcaactttttggacaaaacgtaaataaataaataaa 25579330  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 25538214 - 25538142
Alignment:
Q  164 gtctacgaaacttccatactacttccgtca-ttaccgttcaactttttggacaaaacataaataaataaataaa 236  Q
    ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||    
T  25538214 gtctacgaaacttccttactacttccgtcatttaccgttcaaccttttggacaaaac-ttaataaataaataaa 25538142  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 25579466 - 25579424
Alignment:
Q  7 aacttccttgcaacatcctatagccgtgtggaccaatcacagag 50  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  25579466 aacttccttgcaacatcctatagccgtgtggacc-atcacagag 25579424  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 27531662 - 27531700
Alignment:
Q  7 aacttccttgcaacatcctatagccgtgtggaccaatca 45  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  27531662 aacttcctggcaacttcctatagccgtgtggaccaatca 27531700  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 23381418 - 23381375
Alignment:
Q  331 gtaaaatctttatggcatcaaattataaaatttatggtattttc 374  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  23381418 gtaaaatctttatggcatcaaattacaaaatttatggtactttc 23381375  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 13499476 - 13499512
Alignment:
Q  331 gtaaaatctttatggcatcaaattataaaatttatgg 367  Q
    |||||||||||||| ||||||||||||||||||||||    
T  13499476 gtaaaatctttatgacatcaaattataaaatttatgg 13499512  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 374
Target Start/End: Original strand, 29878836 - 29878868
Alignment:
Q  342 atggcatcaaattataaaatttatggtattttc 374  Q
    |||||||||||||| ||||||||||||||||||    
T  29878836 atggcatcaaattacaaaatttatggtattttc 29878868  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 369
Target Start/End: Original strand, 20024145 - 20024183
Alignment:
Q  331 gtaaaatctttatggcatcaaattataaaatttatggta 369  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  20024145 gtaaaatctttatggcatcaaattacaaaatttatggta 20024183  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 10975784 - 10975741
Alignment:
Q  331 gtaaaatctttatggcatcaaattataaaatttatggtattttc 374  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||    
T  10975784 gtaaaatctttatggcatcaaattacaaaatctatggtactttc 10975741  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 22438716 - 22438759
Alignment:
Q  331 gtaaaatctttatggcatcaaattataaaatttatggtattttc 374  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  22438716 gtaaaatctttatggcatcaaattacaaaatttattgtactttc 22438759  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 33864274 - 33864238
Alignment:
Q  338 ctttatggcatcaaattataaaatttatggtattttc 374  Q
    |||||||||||||||||| |||||||| |||||||||    
T  33864274 ctttatggcatcaaattacaaaatttaaggtattttc 33864238  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 33916648 - 33916684
Alignment:
Q  338 ctttatggcatcaaattataaaatttatggtattttc 374  Q
    |||||||||||||||||| |||||||| |||||||||    
T  33916648 ctttatggcatcaaattacaaaatttaaggtattttc 33916684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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