View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4879-Insertion-11 (Length: 321)

Name: NF4879-Insertion-11
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4879-Insertion-11
NF4879-Insertion-11
[»] chr8 (18 HSPs)
chr8 (7-249)||(278802-279044)
chr8 (7-249)||(636808-637050)
chr8 (7-249)||(822611-822853)
chr8 (241-321)||(276492-276576)
chr8 (241-321)||(639273-639357)
chr8 (241-321)||(825079-825163)
chr8 (16-97)||(2623231-2623312)
chr8 (8-85)||(13231823-13231900)
chr8 (33-124)||(41456066-41456157)
chr8 (13-120)||(35558-35665)
chr8 (7-72)||(279737-279802)
chr8 (7-72)||(636050-636115)
chr8 (7-72)||(821853-821918)
chr8 (281-315)||(10865547-10865581)
chr8 (7-85)||(13231492-13231570)
chr8 (281-315)||(18189602-18189636)
chr8 (10-68)||(30204188-30204245)
chr8 (7-97)||(33231130-33231220)
[»] chr1 (8 HSPs)
chr1 (7-124)||(25476057-25476174)
chr1 (7-97)||(27702583-27702673)
chr1 (36-99)||(28651705-28651768)
chr1 (7-72)||(44633342-44633407)
chr1 (8-95)||(48621150-48621237)
chr1 (14-72)||(28652447-28652505)
chr1 (281-315)||(43805814-43805848)
chr1 (7-85)||(44634035-44634113)
[»] chr2 (7 HSPs)
chr2 (7-126)||(35063603-35063722)
chr2 (13-124)||(38356835-38356946)
chr2 (7-92)||(35064390-35064475)
chr2 (13-61)||(19601539-19601587)
chr2 (33-122)||(40056313-40056402)
chr2 (249-315)||(21267060-21267130)
chr2 (10-70)||(29453620-29453680)
[»] chr3 (8 HSPs)
chr3 (7-123)||(45004704-45004820)
chr3 (12-84)||(50766026-50766098)
chr3 (7-72)||(45145903-45145968)
chr3 (16-112)||(45005504-45005600)
chr3 (7-98)||(45146664-45146755)
chr3 (7-97)||(51489823-51489913)
chr3 (7-72)||(55350409-55350474)
chr3 (12-92)||(35744509-35744589)
[»] chr4 (10 HSPs)
chr4 (10-92)||(26305564-26305646)
chr4 (7-85)||(12007491-12007569)
chr4 (31-91)||(39631387-39631447)
chr4 (7-85)||(50071999-50072077)
chr4 (36-85)||(12007919-12007968)
chr4 (38-97)||(2486956-2487015)
chr4 (7-76)||(50071290-50071359)
chr4 (20-77)||(54628465-54628522)
chr4 (33-85)||(5474862-5474914)
chr4 (33-85)||(32641205-32641257)
[»] chr5 (11 HSPs)
chr5 (7-99)||(24153215-24153307)
chr5 (7-97)||(24153944-24154034)
chr5 (8-66)||(29108704-29108762)
chr5 (9-76)||(17116461-17116528)
chr5 (7-69)||(17115753-17115815)
chr5 (7-72)||(35145615-35145680)
chr5 (281-315)||(20424417-20424451)
chr5 (30-72)||(29265223-29265265)
chr5 (8-85)||(29264658-29264735)
chr5 (41-85)||(29108123-29108166)
chr5 (14-78)||(40816249-40816313)
[»] chr6 (2 HSPs)
chr6 (7-94)||(30921573-30921660)
chr6 (23-97)||(19109586-19109660)
[»] chr7 (4 HSPs)
chr7 (23-70)||(4833191-4833238)
chr7 (23-70)||(21516215-21516262)
chr7 (23-70)||(21516438-21516485)
chr7 (23-70)||(21516661-21516708)
[»] scaffold0301 (2 HSPs)
scaffold0301 (13-69)||(6473-6529)
scaffold0301 (11-65)||(7855-7909)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 279044 - 278802
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagagg 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  279044 agggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcatcttaatagacctcacaagaga 278945  T
Q  107 tgaatgttattttccctatatataaatgagataactatagagggatattcttgcaacacaagtacgagtgtgtgtcattaatcacttagatcacctcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  278944 tgaatgttattttccctatatataaatgagataactatagagggatattcttgcaacacaagtacgagtgtgtgtcattaatcacttagatcacctcatt 278845  T
Q  207 aattaataaaatgaagtatgaacattgaaagagataatttgtg 249  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  278844 aattaataaaatgaagtatgaacaatgaaagagataatttgtg 278802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 636808 - 637050
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagagg 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  636808 agggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcatcttaatagacctcacaagaga 636907  T
Q  107 tgaatgttattttccctatatataaatgagataactatagagggatattcttgcaacacaagtacgagtgtgtgtcattaatcacttagatcacctcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  636908 tgaatgttattttccctatatataaatgagataactatagagggatattcttgcaacacaagtacgagtgtgtgtcattaatcacttagatcacctcatt 637007  T
Q  207 aattaataaaatgaagtatgaacattgaaagagataatttgtg 249  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  637008 aattaataaaatgaagtatgaacaatgaaagagataatttgtg 637050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 822611 - 822853
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagagg 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  822611 agggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcatcttaatagacctcacaagaga 822710  T
Q  107 tgaatgttattttccctatatataaatgagataactatagagggatattcttgcaacacaagtacgagtgtgtgtcattaatcacttagatcacctcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  822711 tgaatgttattttccctatatataaatgagataactatagagggatattcttgcaacacaagtacgagtgtgtgtcattaatcacttagatcacctcatt 822810  T
Q  207 aattaataaaatgaagtatgaacattgaaagagataatttgtg 249  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  822811 aattaataaaatgaagtatgaacaatgaaagagataatttgtg 822853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 276576 - 276492
Alignment:
Q  241 taatttgtgatatcaattttgccggatttatttctg---ctct-tgtgttgaaagagataattttgcttttgacattgaattgag 321  Q
    |||||||||||||||||||||||| |||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||    
T  276576 taatttgtgatatcaattttgccgaatttatttctgatactctgtgtgttgaaagagataattttgcttttgacattgaattgag 276492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 639273 - 639357
Alignment:
Q  241 taatttgtgatatcaattttgccggatttatttctg---ctct-tgtgttgaaagagataattttgcttttgacattgaattgag 321  Q
    |||||||||||||||||||||||| |||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||    
T  639273 taatttgtgatatcaattttgccgaatttatttctgatactctgtgtgttgaaagagataattttgcttttgacattgaattgag 639357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 825079 - 825163
Alignment:
Q  241 taatttgtgatatcaattttgccggatttatttctg---ctct-tgtgttgaaagagataattttgcttttgacattgaattgag 321  Q
    |||||||||||||||||||||||| |||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||    
T  825079 taatttgtgatatcaattttgccgaatttatttctgatactctgtgtgttgaaagagataattttgcttttgacattgaattgag 825163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 2623231 - 2623312
Alignment:
Q  16 tttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 97  Q
    |||||| ||||||| |||||| ||||||| |||||||||||||||||| |||| |||||||||||||||| |||||| ||||    
T  2623231 tttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacct 2623312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 13231823 - 13231900
Alignment:
Q  8 gggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    |||||||||||||  ||||||| | |||| ||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  13231823 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcat 13231900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 41456066 - 41456157
Alignment:
Q  33 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatgttattttcccta 124  Q
    |||||||||||| ||||||||||||| |||| |||||| |||||||||||||| || ||||||||||   ||||||| ||| ||| ||||||    
T  41456066 aacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaattatcccta 41456157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 35665 - 35558
Alignment:
Q  13 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatg 112  Q
    ||||||||  ||||||||||||||||||| || ||| ||||||||||||||||| |  || |||  ||||||| |||||||| ||||   ||| ||||||    
T  35665 gtgtttgtatatttgataaaaacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtcatattaatagatctcatgggagatgaatg 35566  T
Q  113 ttattttc 120  Q
    | ||||||    
T  35565 taattttc 35558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 279737 - 279802
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    |||||||||||| || | ||||| ||||||||| |||| |||| ||||||||||||| ||||||||    
T  279737 agggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagggg 279802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 636115 - 636050
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    |||||||||||| || | ||||| ||||||||| |||| |||| ||||||||||||| ||||||||    
T  636115 agggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagggg 636050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 821918 - 821853
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    |||||||||||| || | ||||| ||||||||| |||| |||| ||||||||||||| ||||||||    
T  821918 agggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagggg 821853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 10865547 - 10865581
Alignment:
Q  281 tgtgttgaaagagataattttgcttttgacattga 315  Q
    ||||||||||||||||||||||| |||||||||||    
T  10865547 tgtgttgaaagagataattttgcctttgacattga 10865581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 13231570 - 13231492
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    |||||||||| |||| |||| | || |||| ||||||| |||||| ||||||||||| || || |||||| ||||||||    
T  13231570 agggaggtgtgtgtctatttaaaaagaactaaagggaggttagtgaaagttttaaaattaaagaggatgtaagtgtcat 13231492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 18189636 - 18189602
Alignment:
Q  281 tgtgttgaaagagataattttgcttttgacattga 315  Q
    ||||||||||||||||||||| |||||||||||||    
T  18189636 tgtgttgaaagagataatttttcttttgacattga 18189602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 30204245 - 30204188
Alignment:
Q  10 gaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactaga 68  Q
    ||||||||| |  ||||||||||||||||||| || |||||||||||||| ||||||||    
T  30204245 gaggtgtttatttatttgataaaaacttaagg-aggttagtgtaagtttttaaactaga 30204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 33231220 - 33231130
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 97  Q
    |||||||| || ||| || |||| |||||| ||||||| ||  || | ||||||||| |||||||||||  |||||||| |||||||||||    
T  33231220 agggaggttttagtctatatgatgaaaactaaagggaggtttatgcatgttttaaaattagaggggatgctagtgtcattttaatagacct 33231130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 25476057 - 25476174
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagagg 106  Q
    ||||||||||||||  |||| |||||||||| |||||| || |||||||||||||||||||||||  |||||||||||| |||||| ||||||   ||||    
T  25476057 agggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacctcaggggagg 25476156  T
Q  107 tgaatgttattttcccta 124  Q
    ||||||| |||| |||||    
T  25476157 tgaatgtaatttccccta 25476174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 27702673 - 27702583
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 97  Q
    ||||||||||||||| |||||||||||||| ||||||  ||||||||| |||||||| || || ||||||||||||||| |||||| ||||    
T  27702673 agggaggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaacct 27702583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 28651768 - 28651705
Alignment:
Q  36 ttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctca 99  Q
    ||||||||| ||| |||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  28651768 ttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacctca 28651705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 44633407 - 44633342
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    |||||||| |||||| |||||| ||  ||||||||||| ||||||||||||||||||||| |||||    
T  44633407 agggaggtatttgtctatttgaaaattacttaagggaggttagtgtaagttttaaaactaaagggg 44633342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 48621237 - 48621150
Alignment:
Q  8 gggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagac 95  Q
    |||| ||||||||| |||  || | |||||||||||||||| |||||  |||||||||||||||| ||||||||| || | |||||||    
T  48621237 gggatgtgtttgtctattacatgataacttaagggagattaatgtaaaatttaaaactagagggggtgtcagtgtgatttcaatagac 48621150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 28652447 - 28652505
Alignment:
Q  14 tgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    |||| ||| |||| ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  28652447 tgttagtctattttataaaaatttaagggaggttagtgtaagttttaaaaatagagggg 28652505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 43805848 - 43805814
Alignment:
Q  281 tgtgttgaaagagataattttgcttttgacattga 315  Q
    |||||||||||||||||||||||||||||||||||    
T  43805848 tgtgttgaaagagataattttgcttttgacattga 43805814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 44634035 - 44634113
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    ||||||||| ||||  ||||||| | |||||||||||| || || |  |||||||||||||||||| ||||| ||||||    
T  44634035 agggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcat 44634113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 35063722 - 35063603
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagagg 106  Q
    |||||| |||||||| |||| ||||||||||||||||| ||  ||||||||||||||||||||||  |||||||| ||| |||||| ||||||   ||||    
T  35063722 agggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggagg 35063623  T
Q  107 tgaatgttattttccctata 126  Q
    ||| ||| |||| |||||||    
T  35063622 tgagtgtaatttcccctata 35063603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 38356946 - 38356835
Alignment:
Q  13 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatg 112  Q
    ||||||||  ||||||| |||||||||||||| ||| |||| |||||||||||||||||| |||  ||||||| |||||||||||||   ||||||| ||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtg 38356847  T
Q  113 ttattttcccta 124  Q
    | ||||||||||    
T  38356846 taattttcccta 38356835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 35064390 - 35064475
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaata 92  Q
    |||||||| ||| || ||||||| | || ||||||||  ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  35064390 agggaggtatttatctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaata 35064475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 19601587 - 19601539
Alignment:
Q  13 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaa 61  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  19601587 gtgtttgtatatttgataaaaacttaagggagattagtgtaagttttaa 19601539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 40056402 - 40056313
Alignment:
Q  33 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatgttattttccc 122  Q
    |||||||||||| ||| |||||||||| |||||||| ||| ||| |||||||| || ||| ||||||   ||||||| ||| ||||||||    
T  40056402 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggaggtgagtgtaattttccc 40056313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 21267060 - 21267130
Alignment:
Q  249 gatatcaattttgccggatttatttctg---ctct-tgtgttgaaagagataattttgcttttgacattga 315  Q
    |||||||||||||| ||||||||| |||   |||| ||| ||||||||||||||||| |||||||||||||    
T  21267060 gatatcaattttgctggatttattcctgatactctgtgttttgaaagagataatttttcttttgacattga 21267130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 29453620 - 29453680
Alignment:
Q  10 gaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagg 70  Q
    |||||||||||| |||| | |||||||||| |||| ||| ||||||||| |||||||||||    
T  29453620 gaggtgtttgtctatttcaaaaaaacttaaaggaggttaatgtaagtttcaaaactagagg 29453680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 45004820 - 45004704
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagagg 106  Q
    |||||| |||||||| |||| ||||||||||||||||| ||  |||||| |||||||||| ||||| ||||| || ||| |||||| |||||| | ||||    
T  45004820 agggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgacattttaataaacctcagaggagg 45004721  T
Q  107 tgaatgttattttccct 123  Q
    ||| ||| |||||||||    
T  45004720 tgagtgtaattttccct 45004704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 50766098 - 50766026
Alignment:
Q  12 ggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtca 84  Q
    |||||||||| | ||||| ||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||    
T  50766098 ggtgtttgtctaattgatgaaaacttaagggagattagtgtaggttttcaaactagagggggtgttagtgtca 50766026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 45145968 - 45145903
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    ||||||||||||||  |||||||| ||||||||||||  ||||||| |||||||||||||||||||    
T  45145968 agggaggtgtttgtttatttgatagaaacttaagggatgttagtgttagttttaaaactagagggg 45145903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 45005504 - 45005600
Alignment:
Q  16 tttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatg 112  Q
    |||||| ||||||| | |||||||||||||| ||||| |||||||||||||| ||  |||| |||||||| |||||| ||||||   ||||||||||    
T  45005504 tttgtctatttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtgaatg 45005600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 45146664 - 45146755
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctc 98  Q
    ||||||||||||||| |||| || | ||| |||||||| ||||||| |||||||||| |||| |||||||  ||||||| |||||| |||||    
T  45146664 agggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacctc 45146755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 51489823 - 51489913
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 97  Q
    ||||||||||||||| ||||| ||||||| |||||||| ||| | |   ||||||||||||||||| ||| |||| ||| |||||| ||||    
T  51489823 agggaggtgtttgtctatttgttaaaaacataagggaggttaatattcattttaaaactagagggggtgttagtgccattttaataaacct 51489913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 55350409 - 55350474
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    ||||||||||||||| ||||||||| ||  |||||||| |||||||  | |||||||||| |||||    
T  55350409 agggaggtgtttgtccatttgataacaaagtaagggaggttagtgtttgatttaaaactaaagggg 55350474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 35744509 - 35744589
Alignment:
Q  12 ggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaata 92  Q
    |||||||||  ||||||| |||| | ||||||| ||| ||| |||||| ||| |||||||||||||| |||| | ||||||    
T  35744509 ggtgtttgtttatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaata 35744589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 26305646 - 26305564
Alignment:
Q  10 gaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaata 92  Q
    |||||||||||| |||||||||||| ||| ||||||||| |||||||||||||| |||||| | |||| ||||||| ||||||    
T  26305646 gaggtgtttgtccatttgataaaaatttatgggagattaatgtaagttttaaaattagaggaggtgtcggtgtcattttaata 26305564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 12007569 - 12007491
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    ||||||||||||||  ||||||| | |||||||| ||| ||| |||| |||||||||||||||||| ||||||||||||    
T  12007569 agggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcat 12007491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 39631387 - 39631447
Alignment:
Q  31 aaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaat 91  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| | |||| |||||    
T  39631387 aaaacttaagggagattattgtaagttttaaaaatagaggggatgtcaatatcattttaat 39631447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 50071999 - 50072077
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    |||||| |||||||  ||||||| | |||||||||||| || |||||||||||||||||| ||||| ||| ||||||||    
T  50071999 agggagatgtttgtatatttgatgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtcat 50072077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 12007919 - 12007968
Alignment:
Q  36 ttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  12007919 ttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcat 12007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 2486956 - 2487015
Alignment:
Q  38 aagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 97  Q
    |||||| |||||||| ||||||||||||||| ||| |||||||||| | |||||||||||    
T  2486956 aagggacattagtgttagttttaaaactagaaggggtgtcagtgtcgttttaatagacct 2487015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 50071359 - 50071290
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgt 76  Q
    ||||| ||||||||  ||||||| ||| |||||||||| ||||||| | ||||||||||||| |||||||    
T  50071359 agggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaactagaagggatgt 50071290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 54628522 - 54628465
Alignment:
Q  20 tcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtc 77  Q
    ||||||| || |||||||||||||| |||||||   ||||||||||||||||| ||||    
T  54628522 tcaatttaatgaaaacttaagggaggttagtgtcgattttaaaactagagggggtgtc 54628465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 5474862 - 5474914
Alignment:
Q  33 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    |||||||||||| || |||||||||||||||  ||||||| ||| ||||||||    
T  5474862 aacttaagggaggttggtgtaagttttaaaataagaggggttgttagtgtcat 5474914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 32641257 - 32641205
Alignment:
Q  33 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    |||||||||||  ||||||||| |||||||| |||||| | ||||||||||||    
T  32641257 aacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcat 32641205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 24153307 - 24153215
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctca 99  Q
    ||||||||||||||| |||| || | |||||||||||| ||||||| | |||||||||||||| || |||| || |||| |||||||||||||    
T  24153307 agggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctca 24153215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 24153944 - 24154034
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 97  Q
    ||||||||||||||  |||||||| ||||||||||||| ||| ||| ||||||||||||||||||| | | | |||||| |||||| ||||    
T  24153944 agggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaacct 24154034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 29108704 - 29108762
Alignment:
Q  8 gggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaacta 66  Q
    |||||||||||||  ||||| |||||||| ||||||| |||||||||||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaacta 29108762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 17116461 - 17116528
Alignment:
Q  9 ggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgt 76  Q
    ||||||||||||  ||||||| ||| ||||| |||| ||||||| ||||||||||||||| |||||||    
T  17116461 ggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagaagggatgt 17116528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 17115815 - 17115753
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagag 69  Q
    |||||| |||||||  ||||||| | |||||||||||| || |||||||||||||||||||||    
T  17115815 agggagatgtttgtatatttgatgagaacttaagggaggttggtgtaagttttaaaactagag 17115753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 35145680 - 35145615
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    ||||| ||||||||| |||| || | ||||  |||||| |||||||||||||||||||||||||||    
T  35145680 agggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactagagggg 35145615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 20424417 - 20424451
Alignment:
Q  281 tgtgttgaaagagataattttgcttttgacattga 315  Q
    ||||||||||||| |||||||||||||||||||||    
T  20424417 tgtgttgaaagagctaattttgcttttgacattga 20424451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 29265223 - 29265265
Alignment:
Q  30 aaaaacttaagggagattagtgtaagttttaaaactagagggg 72  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  29265223 aaaaacttgtgggaggttagtgtaagttttaaaactagagggg 29265265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 29264735 - 29264658
Alignment:
Q  8 gggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    |||||||||||||  |||||  ||||||| ||||||| ||| | ||||||||||||||| || |||||| ||| ||||    
T  29264735 gggaggtgtttgtatatttgtgaaaaactcaagggaggttactataagttttaaaactaaagtggatgttagtatcat 29264658  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 29108166 - 29108123
Alignment:
Q  41 ggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 85  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||    
T  29108166 ggaggttagtgtaagttttaaaactagagggg-tgttagtgtcat 29108123  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 40816313 - 40816249
Alignment:
Q  14 tgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtca 78  Q
    |||||||| ||| ||| |||||||||||||| ||| |||   |||||||||||||||||| ||||    
T  40816313 tgtttgtctattagatgaaaacttaagggaggttaatgtttattttaaaactagaggggaagtca 40816249  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 30921573 - 30921660
Alignment:
Q  7 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaataga 94  Q
    ||||||||||| ||| || |||| | |||||||||||| ||| |||| |||||||||||||||||||| | |||||||| ||||||||    
T  30921573 agggaggtgttagtctatatgattagaacttaagggagtttattgtatgttttaaaactagaggggattttagtgtcattttaataga 30921660  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 19109586 - 19109660
Alignment:
Q  23 atttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 97  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||| || || ||||||||    
T  19109586 attttataaaaacttaagggaggttattgtaagttttaaaaatagaggggatgtcaatgttattttgatagacct 19109660  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 4833191 - 4833238
Alignment:
Q  23 atttgataaaaacttaagggagattagtgtaagttttaaaactagagg 70  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||||    
T  4833191 atttgattaaaacttaaggaaggttagtgtaagttttaaaactagagg 4833238  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 21516262 - 21516215
Alignment:
Q  23 atttgataaaaacttaagggagattagtgtaagttttaaaactagagg 70  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  21516262 atttgataagaacttaagggagattagtgtatattttaaaactagagg 21516215  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 21516485 - 21516438
Alignment:
Q  23 atttgataaaaacttaagggagattagtgtaagttttaaaactagagg 70  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  21516485 atttgataagaacttaagggagattagtgtatattttaaaactagagg 21516438  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 21516708 - 21516661
Alignment:
Q  23 atttgataaaaacttaagggagattagtgtaagttttaaaactagagg 70  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  21516708 atttgataagaacttaagggagattagtgtatattttaaaactagagg 21516661  T

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Target: scaffold0301 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 6473 - 6529
Alignment:
Q  13 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagag 69  Q
    ||||||| | ||||||||| ||||||||||   ||||||||||||||||||||||||    
T  6473 gtgtttgcctatttgataataacttaaggggtgttagtgtaagttttaaaactagag 6529  T

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Target: scaffold0301; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 7909 - 7855
Alignment:
Q  11 aggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaact 65  Q
    ||||||||||  ||||||| | |||||||| |||||||||||| |||||||||||    
T  7909 aggtgtttgtgtatttgatgagaacttaagagagattagtgtaggttttaaaact 7855  T

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