View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4879-Insertion-15 (Length: 301)

Name: NF4879-Insertion-15
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4879-Insertion-15
NF4879-Insertion-15
[»] chr5 (11 HSPs)
chr5 (128-301)||(41522065-41522238)
chr5 (127-301)||(41513130-41513304)
chr5 (8-91)||(41522275-41522358)
chr5 (8-91)||(41513319-41513402)
chr5 (134-291)||(41506895-41507052)
chr5 (132-285)||(41467404-41467563)
chr5 (134-203)||(41497740-41497809)
chr5 (138-198)||(33078088-33078148)
chr5 (208-271)||(41703660-41703723)
chr5 (16-91)||(41467580-41467655)
chr5 (134-203)||(41501769-41501838)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 41522238 - 41522065
Alignment:
Q  128 tgggtctatgtctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaagtccatccgtggcaatacaacaaaaaagc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41522238 tgggtctatgtctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaagtccatccgtggcaacacaacaaaaaagc 41522139  T
Q  228 aaatttcccaatgcagttgacaccgttaaaagaaaattttctttgagcgacattgaaatctccagtgccagttc 301  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41522138 aaatttcccaatgcagttgacacttttaaaagaaaattttctttgagcgacattgaaatctccagtgccagttc 41522065  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 127 - 301
Target Start/End: Complemental strand, 41513304 - 41513130
Alignment:
Q  127 ttgggtctatgtctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaagtccatccgtggcaatacaacaaaaaag 226  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  41513304 ttgggtctatgtctcgaggagtacatgaaaagaaagctttttttggatttgctgcgaagaatgaggttccaagtccatccgtggcaacacaacaaaaaag 41513205  T
Q  227 caaatttcccaatgcagttgacaccgttaaaagaaaattttctttgagcgacattgaaatctccagtgccagttc 301  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41513204 caaatttcccaatgcagttgacactgttaaaagaaaattttctttgagcgacattgaaatctccagtgccagttc 41513130  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 41522358 - 41522275
Alignment:
Q  8 taagctactaagcttgaagatatctctttttgtatcagctagtggaagagtgaaactggataagaatattgagatcatatacct 91  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41522358 taagctactaagcttaaagatatctctttttgtatcagctagtggaagagtgaaactggataagaatattgagatcatatacct 41522275  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 41513402 - 41513319
Alignment:
Q  8 taagctactaagcttgaagatatctctttttgtatcagctagtggaagagtgaaactggataagaatattgagatcatatacct 91  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41513402 taagctactaagcttaaagacatctctttttgtatcagctagtggaagagtgaaactggataagaatattgaggtcatatacct 41513319  T

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Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 41507052 - 41506895
Alignment:
Q  134 tatgtctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaagtccatccgtggcaatacaacaaaaaagcaaattt 233  Q
    |||||||| |||||||||||||||||| ||| |||  ||| |||  ||||||||||||  ||||||||||||  | | | | |||||||||| ||| |||    
T  41507052 tatgtctcaaggagtacatgaaaagaaggctatttacggacttgtcgtgaagaatgagtatccaagtccatcgctagtagttcaacaaaaaaccaagttt 41506953  T
Q  234 cccaatgcagttgacaccgttaaaagaaaattttctttgagcgacattgaaatctcca 291  Q
     | |||||||||||||| || ||||||||||||||||| ||||||| ||||| |||||    
T  41506952 gcaaatgcagttgacacggtcaaaagaaaattttctttcagcgacagtgaaacctcca 41506895  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 285
Target Start/End: Complemental strand, 41467563 - 41467404
Alignment:
Q  132 tctatgtctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaagtccatccgtggc------aatacaacaaaaaa 225  Q
    |||||| ||| |||| |||||||||||||||||  |||||||||  ||||||||| ||| |  |||||| |||| | |||      ||  ||||||||||    
T  41467563 tctatgcctcaaggaatacatgaaaagaaagctagttttggaatcactgtgaagattgaagagccaagttcatcaggggccctgacaacccaacaaaaaa 41467464  T
Q  226 gcaaatttcccaatgcagttgacaccgttaaaagaaaattttctttgagcgacattgaaa 285  Q
    ||||||||  ||||||||||||||| || ||||||||||||||||| ||||||| |||||    
T  41467463 gcaaatttggcaatgcagttgacactgtcaaaagaaaattttctttcagcgacagtgaaa 41467404  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 41497809 - 41497740
Alignment:
Q  134 tatgtctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaagtcca 203  Q
    |||||| | |||||||||||||| ||| ||| ||| ||||||||||||||||||||||| ||||| ||||    
T  41497809 tatgtcccaaggagtacatgaaatgaatgctatttatggaattgctgtgaagaatgaggatccaactcca 41497740  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 33078148 - 33078088
Alignment:
Q  138 tctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaa 198  Q
    |||||||||||||||||||||||  || ||| ||||||||| |||||||||||| ||||||    
T  33078148 tctcgaggagtacatgaaaagaagtctttttctggaattgccgtgaagaatgagcttccaa 33078088  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 41703660 - 41703723
Alignment:
Q  208 tggcaatacaacaaaaaagcaaatttcccaatgcagttgacaccgttaaaagaaaattttcttt 271  Q
    |||||| ||||||| ||||||||||| |||||||||||||||  || |||||||||| ||||||    
T  41703660 tggcaacacaacaagaaagcaaattttccaatgcagttgacagagtcaaaagaaaatcttcttt 41703723  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 41467655 - 41467580
Alignment:
Q  16 taagcttgaagatatctctttttgtatcagctagtggaagagtgaaactggataagaatattgagatcatatacct 91  Q
    ||||||| || ||||||||||||| | ||||  ||||||||||||||||||| ||  | |||||||||||| ||||    
T  41467655 taagcttaaacatatctctttttggaccagccggtggaagagtgaaactggaaaatgagattgagatcataaacct 41467580  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 41501838 - 41501769
Alignment:
Q  134 tatgtctcgaggagtacatgaaaagaaagctgtttttggaattgctgtgaagaatgaggttccaagtcca 203  Q
    |||||||  |||||||||||||||||| ||| | | |||| |||  ||||||||||||| ||||||||||    
T  41501838 tatgtctgaaggagtacatgaaaagaaggctatatatggacttgtcgtgaagaatgaggatccaagtcca 41501769  T

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