View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879-Insertion-16 (Length: 292)
Name: NF4879-Insertion-16
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879-Insertion-16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 37289307 - 37289580
Alignment:
| Q |
18 |
tgcgtccattcctgttttgaaggtacaataattgcttctttcnnnnnnnnnngaacgggctatcttcttgctcatgattattgatatttcgttttgttgt |
117 |
Q |
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| T |
37289307 |
tgcgtccattcctgttttgaaggtacaataattgcttcttttttttttttttgaacgggctatcttcttgctcatgattattgatgtttcgttttgttgt |
37289406 |
T |
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| Q |
118 |
tttctcatggtacaatacgcttgccaaacctgtttggtaataatttcagagatcagataggccgatttgcaagccaacgagttaaaggaaacgattggtt |
217 |
Q |
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| T |
37289407 |
tttctcagggtgcaatacgcttgtcaaacttgtttggtaatgattttggagatcagataggccgatttgcaagccaacgagccaaaggaaatgattgatt |
37289506 |
T |
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| Q |
218 |
tggtatttttaggttctgctattcttactgatcttctctattttgtgtattttatctgcatgtgtttattttgt |
291 |
Q |
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| T |
37289507 |
tggtatttttaggttctgctattcttactgatcttctctattttgtgtattttatctgcatgtgtttattttgt |
37289580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 71 - 292
Target Start/End: Original strand, 13927521 - 13927742
Alignment:
| Q |
71 |
aacgggctatcttcttgctcatgattattgatatttcgttttgttgttttctcatggtacaatacgcttgccaaacctgtttggtaataatttcagagat |
170 |
Q |
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| T |
13927521 |
aacgggctatcttcttgctcatgattattgatatttcgttttgttgttttctcagggtgccatacacttgccaaacctgtttggtaatgatttcggagat |
13927620 |
T |
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| Q |
171 |
cagataggccgatttgcaagccaacgagttaaaggaaacgattggtttggtatttttaggttctgctattcttactgatcttctctattttgtgtatttt |
270 |
Q |
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| T |
13927621 |
cagatagaccaatttgcaagccaactagccaaaggaaacgattggtttggtatttttaggttatgctattcttactgatcttctctattttgtgtatttt |
13927720 |
T |
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| Q |
271 |
atctgcatgtgtttattttgtc |
292 |
Q |
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| T |
13927721 |
atctgcatgtgtttattttgtc |
13927742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 50568556 - 50568487
Alignment:
| Q |
221 |
tatttttaggttctgctattcttactgatcttctctattttgtgtattttatctgcatgtgtttattttg |
290 |
Q |
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| T |
50568556 |
tatttttaggttcctctattcttgatcatcttctctcttttgtgtatatgatatgcatgtgtttactttg |
50568487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 6148011 - 6148047
Alignment:
| Q |
21 |
gtccattcctgttttgaaggtacaataattgcttctt |
57 |
Q |
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| T |
6148011 |
gtccattcctgtttcgaaggcacaataattgcttctt |
6148047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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