View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4879-Insertion-2 (Length: 678)

Name: NF4879-Insertion-2
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4879-Insertion-2
NF4879-Insertion-2
[»] chr7 (25 HSPs)
chr7 (581-678)||(5811161-5811259)
chr7 (582-678)||(13108242-13108339)
chr7 (578-678)||(46475119-46475221)
chr7 (581-678)||(23980226-23980324)
chr7 (585-668)||(21807324-21807408)
chr7 (605-678)||(15020374-15020447)
chr7 (583-674)||(36346564-36346657)
chr7 (582-678)||(42220962-42221059)
chr7 (581-659)||(42950034-42950113)
chr7 (582-675)||(45782658-45782753)
chr7 (580-640)||(384573-384635)
chr7 (580-664)||(34828174-34828259)
chr7 (39-86)||(5094306-5094353)
chr7 (582-675)||(28307493-28307588)
chr7 (581-675)||(31148388-31148483)
chr7 (36-87)||(39751666-39751717)
chr7 (582-667)||(36957535-36957620)
chr7 (36-87)||(5098110-5098161)
chr7 (317-360)||(10612389-10612432)
chr7 (582-675)||(26972201-26972296)
chr7 (644-678)||(20086690-20086724)
chr7 (583-657)||(7699882-7699958)
chr7 (583-657)||(7700080-7700156)
chr7 (583-657)||(7700278-7700354)
chr7 (583-657)||(7700476-7700552)
[»] chr6 (5 HSPs)
chr6 (584-678)||(14023029-14023124)
chr6 (582-675)||(24208542-24208636)
chr6 (36-81)||(13848750-13848795)
chr6 (196-241)||(126868-126913)
chr6 (582-664)||(3118045-3118129)
[»] chr2 (12 HSPs)
chr2 (581-675)||(6376236-6376331)
chr2 (576-664)||(16089930-16090019)
chr2 (580-675)||(37498859-37498956)
chr2 (578-667)||(36315667-36315758)
chr2 (581-675)||(44958211-44958307)
chr2 (36-87)||(2387080-2387131)
chr2 (586-664)||(3830900-3830979)
chr2 (582-664)||(33732678-33732761)
chr2 (36-87)||(36216001-36216052)
chr2 (583-678)||(41188864-41188961)
chr2 (643-678)||(24137153-24137188)
chr2 (583-678)||(37914236-37914332)
[»] chr3 (8 HSPs)
chr3 (580-678)||(39467098-39467197)
chr3 (581-675)||(51339781-51339876)
chr3 (580-678)||(29472904-29473003)
chr3 (583-664)||(21559670-21559753)
chr3 (582-675)||(30735494-30735589)
chr3 (583-667)||(38231398-38231484)
chr3 (36-86)||(37975075-37975125)
chr3 (583-664)||(39072278-39072360)
[»] chr8 (17 HSPs)
chr8 (583-668)||(33726117-33726203)
chr8 (582-678)||(18184648-18184745)
chr8 (581-675)||(12665443-12665539)
chr8 (36-87)||(417366-417417)
chr8 (36-87)||(14029841-14029892)
chr8 (36-87)||(24516782-24516833)
chr8 (36-87)||(36803814-36803865)
chr8 (36-87)||(12877182-12877233)
chr8 (584-677)||(38845023-38845118)
chr8 (422-479)||(26295843-26295900)
chr8 (422-479)||(26309100-26309157)
chr8 (422-479)||(26343161-26343218)
chr8 (36-87)||(6337806-6337857)
chr8 (581-678)||(30432434-30432532)
chr8 (581-678)||(36189311-36189408)
chr8 (583-657)||(10203780-10203856)
chr8 (581-675)||(31318903-31318999)
[»] chr1 (7 HSPs)
chr1 (585-678)||(19258674-19258768)
chr1 (582-678)||(28647448-28647545)
chr1 (582-675)||(34307136-34307231)
chr1 (582-664)||(2509133-2509217)
chr1 (36-87)||(8026744-8026795)
chr1 (36-87)||(25650862-25650912)
chr1 (585-662)||(39249864-39249943)
[»] chr4 (11 HSPs)
chr4 (583-664)||(21390955-21391037)
chr4 (582-675)||(44275804-44275898)
chr4 (602-668)||(52191220-52191286)
chr4 (36-87)||(23317852-23317903)
chr4 (36-87)||(25922927-25922978)
chr4 (582-675)||(7217863-7217958)
chr4 (585-678)||(35545007-35545102)
chr4 (583-673)||(49243915-49244006)
chr4 (36-87)||(50997946-50997997)
chr4 (583-678)||(46192454-46192551)
chr4 (580-664)||(6112739-6112824)
[»] scaffold0043 (1 HSPs)
scaffold0043 (581-657)||(87160-87237)
[»] chr5 (14 HSPs)
chr5 (584-668)||(4300544-4300629)
chr5 (582-678)||(31800653-31800750)
chr5 (36-87)||(27261650-27261701)
chr5 (36-87)||(31170366-31170417)
chr5 (581-664)||(27553372-27553455)
chr5 (585-673)||(19124474-19124563)
chr5 (36-87)||(27265421-27265472)
chr5 (583-678)||(1815619-1815712)
chr5 (583-675)||(2237374-2237468)
chr5 (583-675)||(39371025-39371119)
chr5 (583-673)||(13347228-13347320)
chr5 (582-629)||(40887940-40887988)
chr5 (47-87)||(41873547-41873587)
chr5 (582-664)||(42683708-42683792)
[»] scaffold0438 (1 HSPs)
scaffold0438 (422-479)||(13322-13379)
[»] scaffold0035 (1 HSPs)
scaffold0035 (36-87)||(84054-84105)
[»] scaffold0062 (1 HSPs)
scaffold0062 (583-675)||(6816-6910)
[»] scaffold0250 (1 HSPs)
scaffold0250 (347-400)||(4513-4568)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 581 - 678
Target Start/End: Original strand, 5811161 - 5811259
Alignment:
Q  581 taggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccctt 5811259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 582 - 678
Target Start/End: Complemental strand, 13108339 - 13108242
Alignment:
Q  582 aggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccctt 13108242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 46475221 - 46475119
Alignment:
Q  578 atataggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgtta-ggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||| || |||||||||||||||||||||||||| ||||||    
T  46475221 atataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccc 46475122  T
Q  676 ctt 678  Q
    |||    
T  46475121 ctt 46475119  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 581 - 678
Target Start/End: Complemental strand, 23980324 - 23980226
Alignment:
Q  581 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||||| |||||||||||||  | ||||||||| ||||  ||||||  ||||||||||||||||||||||||||||||||||||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcacccctt 23980226  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 585 - 668
Target Start/End: Original strand, 21807324 - 21807408
Alignment:
Q  585 aaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatc 668  Q
    |||||||||||| |||| |||||||||||||| || ||| |||||| ||||||||||| |||||||||||||||||||| |||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatc 21807408  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 605 - 678
Target Start/End: Complemental strand, 15020447 - 15020374
Alignment:
Q  605 tttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||| |||| |||| ||||||||  ||||||||||||||||||||| ||| |||||||||    
T  15020447 tttttatacacctcccatatacatctcatgtgttagggatattttagtaatttcacatcatatcttcacccctt 15020374  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 583 - 674
Target Start/End: Original strand, 36346564 - 36346657
Alignment:
Q  583 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacc 674  Q
    ||||||||||||||||||||| ||||| |||||||||  ||||||||| ||| |||||||| ||||||||||||||| |||||| ||| |||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacc 36346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 582 - 678
Target Start/End: Original strand, 42220962 - 42221059
Alignment:
Q  582 aggaaaaagataggtagacaccttttttatacacctcccatgtacacctcacgtgttaggagta-ttttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||||||||||| ||||||| |  ||||||||  || |||||||| ||| |||||||||||| |||||| ||| |||||||||    
T  42220962 aggaaaaagataggtagacacctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctt 42221059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 581 - 659
Target Start/End: Original strand, 42950034 - 42950113
Alignment:
Q  581 taggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttca 659  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||||| || || | ||| |||||||||||||||||    
T  42950034 taggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaatttca 42950113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 675
Target Start/End: Original strand, 45782658 - 45782753
Alignment:
Q  582 aggaaaaagataggtagacacc-ttttttatacacctcccatgtacac-ctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||||| |||||||||||| |   |||||||| | || |||||||| ||||||||||||||| |||||| ||| ||||||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccc 45782753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 640
Target Start/End: Complemental strand, 384635 - 384573
Alignment:
Q  580 ataggaaaaagataggtagaca-ccttttt-tatacacctcccatgtacacctcacgtgttag 640  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||    
T  384635 ataggaaaaagataggtagacatcctttttctatacacctcccatgtacatctcatgtgttag 384573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 580 - 664
Target Start/End: Complemental strand, 34828259 - 34828174
Alignment:
Q  580 ataggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    |||||||||||||||||||||| ||||||| ||||||| |  ||| ||||| ||  ||||||| ||||||||||||||| ||||||    
T  34828259 ataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatca 34828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 5094353 - 5094306
Alignment:
Q  39 atttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttg 86  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  5094353 atttttgccaagtcgttcaactaaattggaatgaatgcataatctttg 5094306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 582 - 675
Target Start/End: Original strand, 28307493 - 28307588
Alignment:
Q  582 aggaaaaagataggtagacacctttttt-atacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||| ||||||| |||||||||  ||||||| || ||  ||||| | ||||||||||||||| |||||| ||| ||||||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccc 28307588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 675
Target Start/End: Complemental strand, 31148483 - 31148388
Alignment:
Q  581 taggaaaaagataggtagacac-cttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||||| |||||| |||||||||  ||  ||||| ||  |||||||  |||||||||||||| |||||| ||| ||||||    
T  31148483 taggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcaccc 31148388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39751717 - 39751666
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  39751717 atgatttttgccaagtggttcaactaaatttgaatgaatgcatgatctttgg 39751666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 582 - 667
Target Start/End: Complemental strand, 36957620 - 36957535
Alignment:
Q  582 aggaaaaagataggtagacac-cttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacat 667  Q
    |||||||||||||||||||||  ||||||||||||||  ||| |||||| || ||||| || ||||||||||||||| |||| ||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacattacat 36957535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 5098110 - 5098161
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||||||||  |||||||||||||| ||  ||||||||||||||||    
T  5098110 atgatttttgccaagctgttcaactaaattggaacgaatgcatgatctttgg 5098161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 10612389 - 10612432
Alignment:
Q  317 attaatcaaggaaattacagtcgatatattctccggagatggac 360  Q
    |||| |||||||||||||| |||| |||||||||||||||||||    
T  10612389 attagtcaaggaaattacactcgaaatattctccggagatggac 10612432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 675
Target Start/End: Original strand, 26972201 - 26972296
Alignment:
Q  582 aggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||| ||||||| |||||| ||  ||||||| || || || ||||| |||||| |||||||| |||||| ||| ||||||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccc 26972296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 644 - 678
Target Start/End: Original strand, 20086690 - 20086724
Alignment:
Q  644 tattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||||||||| |||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctt 20086724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 657
Target Start/End: Original strand, 7699882 - 7699958
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaattt 657  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | |||||||||||||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattt 7699958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 657
Target Start/End: Original strand, 7700080 - 7700156
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaattt 657  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | |||||||||||||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattt 7700156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 657
Target Start/End: Original strand, 7700278 - 7700354
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaattt 657  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | |||||||||||||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattt 7700354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 657
Target Start/End: Original strand, 7700476 - 7700552
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaattt 657  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | |||||||||||||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattt 7700552  T

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Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 584 - 678
Target Start/End: Complemental strand, 14023124 - 14023029
Alignment:
Q  584 gaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcacccctt 14023029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 582 - 675
Target Start/End: Complemental strand, 24208636 - 24208542
Alignment:
Q  582 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccc 24208542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 13848750 - 13848795
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgat 81  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13848750 atgatttttgccaagtcgttcaactaaattgaaatgaatgcatgat 13848795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 126913 - 126868
Alignment:
Q  196 gtgcatggacctagtgtcaatatcccatattttagcttgaattcct 241  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||    
T  126913 gtgcatggacttggtgtcaatatcccatattttaacttgaattcct 126868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 664
Target Start/End: Original strand, 3118045 - 3118129
Alignment:
Q  582 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacac-ctcacgtgttaggagtattttagtaatttcacatca 664  Q
    |||||||||||||||||||| ||||||| ||||| |||  |||||||| | || || ||||| ||||||||||||||| ||||||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatca 3118129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 581 - 675
Target Start/End: Original strand, 6376236 - 6376331
Alignment:
Q  581 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||  |||||||||||||||||||||||||||||||||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcaccc 6376331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 664
Target Start/End: Complemental strand, 16090019 - 16089930
Alignment:
Q  576 tcatataggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    |||| ||||||||||||||||||||||||||||| |||||||||  ||||||||| || |||||||| ||||||||||||||| ||||||    
T  16090019 tcatttaggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatca 16089930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 580 - 675
Target Start/End: Original strand, 37498859 - 37498956
Alignment:
Q  580 ataggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||||| || || |||||||| ||||||||||||||| |||||| ||| ||||||    
T  37498859 ataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccc 37498956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 578 - 667
Target Start/End: Complemental strand, 36315758 - 36315667
Alignment:
Q  578 atataggaaaaagataggtagaca-cctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacat 667  Q
    |||||||||||||||||||||||| |||||||| |||||||||  |||||||||||| |||| ||| |||||||| | ||||||||||||||    
T  36315758 atataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacat 36315667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 581 - 675
Target Start/End: Complemental strand, 44958307 - 44958211
Alignment:
Q  581 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||||||| ||||||| |||||||||  ||||| ||| ||| |||||||| ||||||||||||||| |||||| ||| ||||||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccc 44958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 2387080 - 2387131
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  2387080 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 2387131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 586 - 664
Target Start/End: Original strand, 3830900 - 3830979
Alignment:
Q  586 aaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    |||||||||||||||| ||||||| |||||||||  ||||||||| || |||||||| |||| |||||||||| ||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatca 3830979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 664
Target Start/End: Complemental strand, 33732761 - 33732678
Alignment:
Q  582 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    |||||||||||||||||||||| ||||| |||||||||  ||||||||| ||  | ||||| ||||||||||||||| ||||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatca 33732678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 36216001 - 36216052
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  36216001 atgatttttgccaagtggttcaactaaattggaatgaatgcatgatctttgg 36216052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 678
Target Start/End: Complemental strand, 41188961 - 41188864
Alignment:
Q  583 ggaaaaagataggtagacaccttttt--tatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||| ||||||| ||||  |||||||||| |||||||| | || |||| ||   |||||||||||||| |||||||||| ||| |||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctt 41188864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 24137153 - 24137188
Alignment:
Q  643 gtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||||||||||||||| |||||    
T  24137153 gtattttagtaatttcacatcacatcctcatccctt 24137188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 678
Target Start/End: Original strand, 37914236 - 37914332
Alignment:
Q  583 ggaaaaagataggtagacacc--ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||||||  ||||| |||||||||  ||||||||| || ||   ||| |||||||| | ||||||||||||||  |||||||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccagg-gtattttaatcatttcacatcacattatcacccctt 37914332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 580 - 678
Target Start/End: Original strand, 39467098 - 39467197
Alignment:
Q  580 ataggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |  |||||||||||||||| ||||||||||||||||||    
T  39467098 ataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccctt 39467197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 581 - 675
Target Start/End: Original strand, 51339781 - 51339876
Alignment:
Q  581 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||||||| ||| |||||||  ||||||||||||||| |||||| ||| ||||||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccc 51339876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 580 - 678
Target Start/End: Complemental strand, 29473003 - 29472904
Alignment:
Q  580 ataggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||||||| ||||||| ||||||| |  ||| ||||| || |||||||| ||||||||||||||| |||||| ||| ||| |||||    
T  29473003 ataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccctt 29472904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 583 - 664
Target Start/End: Complemental strand, 21559753 - 21559670
Alignment:
Q  583 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatca 664  Q
    |||||||||||| |||||||| ||||| |||||||||  ||||||||| | | |||||||| ||||||||||||||| ||||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatca 21559670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 582 - 675
Target Start/End: Original strand, 30735494 - 30735589
Alignment:
Q  582 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagta-ttttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||| ||||||| ||||||| |  ||||||||  || |||||||| ||| |||||||||||| |||||| ||| ||||||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccc 30735589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 667
Target Start/End: Complemental strand, 38231484 - 38231398
Alignment:
Q  583 ggaaaaagataggtagaca-cctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacat 667  Q
    ||||||||||||||||||| |||||||| |||||||||  ||||||||| || |||| ||| ||| |||||| ||||||||| ||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacat 38231398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 37975125 - 37975075
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttg 86  Q
    |||||||||||||||  |||||||||||||| ||  |||||||||||||||    
T  37975125 atgatttttgccaagctgttcaactaaattggaacgaatgcatgatctttg 37975075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 664
Target Start/End: Original strand, 39072278 - 39072360
Alignment:
Q  583 ggaaaaagataggtagacac-cttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    |||||||||||||||||||| |||||||||||| ||   ||||||||| || |||| | | ||||||||||||  ||||||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaacatcacatca 39072360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 583 - 668
Target Start/End: Complemental strand, 33726203 - 33726117
Alignment:
Q  583 ggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatc 668  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatc 33726117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 582 - 678
Target Start/End: Complemental strand, 18184745 - 18184648
Alignment:
Q  582 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||||| ||||||| ||||||||   |||||||||||| |||||||| ||||||||||||||| | |||| ||| |||||||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctt 18184648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 581 - 675
Target Start/End: Complemental strand, 12665539 - 12665443
Alignment:
Q  581 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||||||| |||||||  ||||||||  ||||| ||| ||| |||||||| ||||||||||||||| |||||| ||| ||||||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccc 12665443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 417366 - 417417
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  417366 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 417417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 14029892 - 14029841
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  14029892 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 14029841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 24516782 - 24516833
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  24516782 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 24516833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 36803814 - 36803865
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  36803814 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 36803865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 12877233 - 12877182
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  12877233 atgatttttgtcaagtcgttcaactaaatttgaatgaatgcatgatctttgg 12877182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 677
Target Start/End: Original strand, 38845023 - 38845118
Alignment:
Q  584 gaaaaagataggtagacacc-ttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccct 677  Q
    ||||||||||| || ||||| |||||||||||||   |||||||||| | | ||||||||  ||||||||||||||| ||||||||| ||||||||    
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccct 38845118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 26295900 - 26295843
Alignment:
Q  422 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 479  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26295900 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 26295843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 26309157 - 26309100
Alignment:
Q  422 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 479  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26309157 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 26309100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 26343218 - 26343161
Alignment:
Q  422 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 479  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26343218 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 26343161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 6337806 - 6337857
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||||||| | |||||||||||||  ||| ||||||||||||||||    
T  6337806 atgatttttgccaaattgttcaactaaatttgaatgaatgcatgatctttgg 6337857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 678
Target Start/End: Complemental strand, 30432532 - 30432434
Alignment:
Q  581 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||| | |||||||| ||||| |||||||||  ||||||| | ||  | ||| | ||||||||||||||| |||||| ||| |||||||||    
T  30432532 taggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcacccctt 30432434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 678
Target Start/End: Complemental strand, 36189408 - 36189311
Alignment:
Q  581 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||||| ||||||| ||||||| |  ||||||||| ||  ||||||| |||||||| |||||| | |||| ||| |||| ||||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtacacc-catatgttaggggtattttaataattttatatcatatcatcactcctt 36189311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 657
Target Start/End: Complemental strand, 10203856 - 10203780
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaattt 657  Q
    ||||||||||||||||||| ||||||| ||||| |||  ||||||| ||||| || |||||  ||||||||||||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattt 10203780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 675
Target Start/End: Complemental strand, 31318999 - 31318903
Alignment:
Q  581 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||||||| | ||||| |||||| ||  || |||||| | | || |||||||||||| |||||||| |||||| ||| ||||||    
T  31318999 taggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcaccc 31318903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 585 - 678
Target Start/End: Original strand, 19258674 - 19258768
Alignment:
Q  585 aaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||||| ||||||| |||||||||||||||||  ||||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccacccctt 19258768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 582 - 678
Target Start/End: Complemental strand, 28647545 - 28647448
Alignment:
Q  582 aggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| | || ||||||||| ||||||| |||||||||||||||||  ||||||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctt 28647448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 582 - 675
Target Start/End: Original strand, 34307136 - 34307231
Alignment:
Q  582 aggaaaaagataggtagacacctttttt-atacacctcccatgtacac-ctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||| | || |||||||| ||||||||||||||| |||||| ||| ||||||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccc 34307231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 664
Target Start/End: Complemental strand, 2509217 - 2509133
Alignment:
Q  582 aggaaaaagataggtagacacctttttt-atacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatca 664  Q
    ||||||||||||||||||||| |||||| |||||||||  ||||||| ||||| || |||||  |||||||||||||| ||||||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatca 2509133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 8026795 - 8026744
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  8026795 atgatttttgtcaagtcgttcaactaaatttgaatgaatgcatgatctttgg 8026744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 25650862 - 25650912
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  25650862 atgatttttgc-aagtcgttcaactaaattggaatgaatgcatgatctttgg 25650912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 585 - 662
Target Start/End: Original strand, 39249864 - 39249943
Alignment:
Q  585 aaaaagataggtagacacctttttt-atacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacat 662  Q
    ||||||||||||||||||||||||| |||||||||  ||||||| || || || ||||| ||||||||||||||| ||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacat 39249943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 664
Target Start/End: Original strand, 21390955 - 21391037
Alignment:
Q  583 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    ||||||||||||||||||||| ||||| ||||||||   |||||||||||| |||||||| ||||||||||||||| ||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatca 21391037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 675
Target Start/End: Complemental strand, 44275898 - 44275804
Alignment:
Q  582 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||| |||||||| ||||| |||||||||  ||||||||| || |||||||| ||||||||||||||| |||||| ||| ||||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccc 44275804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 602 - 668
Target Start/End: Original strand, 52191220 - 52191286
Alignment:
Q  602 ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatc 668  Q
    ||||||||||||||||| | |||||||| ||  |||||||||||||||||||||||| |||||||||    
T  52191220 ccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatc 52191286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 23317852 - 23317903
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  23317852 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 23317903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 25922927 - 25922978
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  25922927 atgatttttgtcaagtcgttcaactaaattggaatgaatgcatgatctttgg 25922978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 582 - 675
Target Start/End: Complemental strand, 7217958 - 7217863
Alignment:
Q  582 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    |||||||||||||||| ||||| ||||| |||||||||  ||||||||| ||| ||||||   ||||||||||||||| |||||| ||| ||||||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccc 7217863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 585 - 678
Target Start/End: Complemental strand, 35545102 - 35545007
Alignment:
Q  585 aaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtatttt-agtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||| ||||| ||||||| |  ||||||||  || |||||||| ||||||| |||||||| |||||| ||| |||||||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccctt 35545007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 583 - 673
Target Start/End: Complemental strand, 49244006 - 49243915
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcac 673  Q
    ||||||||||| ||||||| ||||||| |||||||||  ||||||||  || || ||||| ||||||||||||||| |||||| ||| ||||    
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcac 49243915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 50997946 - 50997997
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  50997946 atgatttttggcaagtcgttcaactaaatttgaatgaatgcatgatctttgg 50997997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 678
Target Start/End: Complemental strand, 46192551 - 46192454
Alignment:
Q  583 ggaaaaagataggtagacacctttttt--atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||||| |||||  |||||||||  ||||||||| || ||   ||| |||||||| | ||||||||||||||  |||||||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctt 46192454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 664
Target Start/End: Complemental strand, 6112824 - 6112739
Alignment:
Q  580 ataggaaaaagataggtagacac-cttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    ||||||||||||||||||||||| |||||| |||||| ||  ||||||||  || || ||||| |||||| |||||||| ||||||    
T  6112824 ataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatca 6112739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 581 - 657
Target Start/End: Original strand, 87160 - 87237
Alignment:
Q  581 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaattt 657  Q
    ||||||||||||||||||||||||||||| ||||||||   ||||||||| || |||||||| |||||||||||||||    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattt 87237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 584 - 668
Target Start/End: Original strand, 4300544 - 4300629
Alignment:
Q  584 gaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatc 668  Q
    ||||||||| | |||||| ||||||||||||| ||| ||||||||||||| ||||||||  ||||||| |||||||||||||||||    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatc 4300629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 678
Target Start/End: Complemental strand, 31800750 - 31800653
Alignment:
Q  582 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    |||||||||||||| ||||||| ||||| |||||||||   |||||||| ||  ||||||| ||||||||||||||| |||||| ||| |||||||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctt 31800653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 27261701 - 27261650
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  27261701 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 27261650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 31170417 - 31170366
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  31170417 atgatttttgccaagtcgttcaactaaatttgaatgaatgcatgatctttgg 31170366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 664
Target Start/End: Original strand, 27553372 - 27553455
Alignment:
Q  581 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 664  Q
    ||||||||| |||| |||||||| ||||| |||||||||  |||||||||  | |||||||||||||||||||||||| ||||||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatca 27553455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 673
Target Start/End: Original strand, 19124474 - 19124563
Alignment:
Q  585 aaaaagataggtagacacct-tttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcac 673  Q
    |||||||||||||||||||  |||||||||||||| ||| ||||  |||||||| |   ||||||||||||||| |||||| ||| ||||    
T  19124474 aaaaagataggtagacaccaatttttatacacctctcatatacagttcacgtgtcaaaggtattttagtaattttacatcatatcatcac 19124563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 27265421 - 27265472
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||||||||  |||||||||||||| ||  ||||||||||||||||    
T  27265421 atgatttttgccaagctgttcaactaaattggaacgaatgcatgatctttgg 27265472  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 678
Target Start/End: Original strand, 1815619 - 1815712
Alignment:
Q  583 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 678  Q
    ||||||||||||||||||||||||||| ||| |      |||||||||  | |||||||| ||||||||||||||| |||||| ||| |||||||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcacccctt 1815712  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 675
Target Start/End: Complemental strand, 2237468 - 2237374
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||||| ||||||| |||||| ||  ||||||| || || || ||||| |||||| |||||||| |||||| ||| ||||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcaccc 2237374  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 675
Target Start/End: Complemental strand, 39371119 - 39371025
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||||| ||||||| |||||| ||  ||||||| || || || ||||| |||||| |||||||| |||||| ||| ||||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccc 39371025  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 673
Target Start/End: Complemental strand, 13347320 - 13347228
Alignment:
Q  583 ggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcac 673  Q
    ||||||||||||||||||| ||||||| |||||| ||  ||||||| ||||| || ||||| |||||| |||||||  |||||| ||| ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcac 13347228  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 582 - 629
Target Start/End: Original strand, 40887940 - 40887988
Alignment:
Q  582 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc 629  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacc 40887988  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 41873587 - 41873547
Alignment:
Q  47 caagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    |||||||||||||||||||  ||| ||||||||||||||||    
T  41873587 caagtcgttcaactaaatttgaatgaatgcatgatctttgg 41873547  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 582 - 664
Target Start/End: Complemental strand, 42683792 - 42683708
Alignment:
Q  582 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatca 664  Q
    ||||||||||||| |||||| ||||||| |||||||||  ||||||||| | |  | ||||| ||||||||||||||| ||||||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatca 42683708  T

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Target: scaffold0438 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 13379 - 13322
Alignment:
Q  422 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 479  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  13379 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 13322  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 84054 - 84105
Alignment:
Q  36 atgatttttgccaagtcgttcaactaaattgaaatcaatgcatgatctttgg 87  Q
    ||||||||||| || |||||||||||||||  ||| ||||||||||||||||    
T  84054 atgatttttgcaaaatcgttcaactaaatttgaatgaatgcatgatctttgg 84105  T

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Target: scaffold0062 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 675
Target Start/End: Complemental strand, 6910 - 6816
Alignment:
Q  583 ggaaaaagataggtagacacctttttt-atacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 675  Q
    ||||||||||||||||| ||||||||| |||||| ||  ||||||| ||||| || |||||  ||||| |||||||| |||||| ||| ||||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccc 6816  T

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Target: scaffold0250 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 4513 - 4568
Alignment:
Q  347 ctccggagatgga--ctgcaaaccaagatttagcagaggttaaaagaacagaagac 400  Q
    |||||||||||||  |||||||||||||||||||| || |||||||| || |||||    
T  4513 ctccggagatggagactgcaaaccaagatttagcaaagcttaaaagagcataagac 4568  T

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