View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879-Insertion-3 (Length: 669)
Name: NF4879-Insertion-3
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 30 - 669
Target Start/End: Complemental strand, 4788725 - 4788085
Alignment:
| Q |
30 |
acaataacaataacaatagcgtcgacgtgtttttgcgtcttcccgattagcaacaataaaactctctctactgcacataaaattagaacgattcttctta |
129 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788725 |
acaataacaataacattagcgtcgacgtgtttttgcgtcttcccgattagcaacaataaaactctctctactgcacataaaattagaacgattcttctta |
4788626 |
T |
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| Q |
130 |
gttccactacgacgtcgttttatattgatgggtcttttcagaaaggttttcggtttcctagggttttctaaagatgatgacaaccacgatcacgattcca |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788625 |
gttccactacgacgtcgttttatattgatgggtcttttcagaaaggttttcggattcctagggttttctaaagatgatgacaaccacgatcacgattcca |
4788526 |
T |
|
| Q |
230 |
atgataacaataactccgacgatcgacacgccgcctccggtgccggtggtcaacatcgtccaacgaattttcgcgtcaaagaaaccggtcaacctcgtag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788525 |
atgataacaataactccgacgatcgacacgccgcctccggtgccggtggtcaacatcgtccaacgaattttcgcgtcaaagaaaccggtcaacctcgtag |
4788426 |
T |
|
| Q |
330 |
aggctttagcgttaaggctcaggttgtgaacgatcgtcctcaacaacaacaacttggtcccgttctcgctccttctacctcctctgatggcggtgttcag |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788425 |
aggctttagcgttaaggctcaggttgtgaacgatcgtcctcaacaacaacaacttggtcccgttctcgctccttctacctcctctgatggcggtgttcag |
4788326 |
T |
|
| Q |
430 |
gtaggtccctttttcttcgttttcaatctaattctcatttaacttaattaatttacgattagctagatgtagatcaaattacttacatttacagtttatg |
529 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788325 |
gtaggtccctttttcttcattttcaatctaattctcatttaacttaattaatttacgattagctagatgtagatcaaattacttacatttacagtttatg |
4788226 |
T |
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| Q |
530 |
atttgaatctcaattgttcaactttgaatctgaatcatcctttcattgcatt-ttttagtgttagtattttactttatgcatcccttaaattgtttccgc |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4788225 |
atttgaatctcaattgttcaactttgaatctgaatcatcctttcattgcatttttttagtgttagtattttactttatgcaacccttaaattgtttccgc |
4788126 |
T |
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| Q |
629 |
tgagttgaaatatgctcgatttctggatgttatgttgtcca |
669 |
Q |
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| T |
4788125 |
tgagttgaaatatgctcgatttctggatgttatgttgtcca |
4788085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 43395885 - 43395916
Alignment:
| Q |
18 |
acaataacaataacaataacaataacaatagc |
49 |
Q |
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| T |
43395885 |
acaataacaataacaataacaataacaatagc |
43395916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 49434686 - 49434657
Alignment:
| Q |
18 |
acaataacaataacaataacaataacaata |
47 |
Q |
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| T |
49434686 |
acaataacaataacaataacaataacaata |
49434657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 49434692 - 49434663
Alignment:
| Q |
18 |
acaataacaataacaataacaataacaata |
47 |
Q |
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| T |
49434692 |
acaataacaataacaataacaataacaata |
49434663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 49434698 - 49434669
Alignment:
| Q |
18 |
acaataacaataacaataacaataacaata |
47 |
Q |
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| T |
49434698 |
acaataacaataacaataacaataacaata |
49434669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 52858496 - 52858467
Alignment:
| Q |
18 |
acaataacaataacaataacaataacaata |
47 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52858496 |
acaataacaataacaataacaataacaata |
52858467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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