View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4879-Insertion-4 (Length: 625)

Name: NF4879-Insertion-4
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4879-Insertion-4
NF4879-Insertion-4
[»] chr3 (15 HSPs)
chr3 (527-625)||(30222031-30222129)
chr3 (535-624)||(48648233-48648322)
chr3 (535-625)||(51827427-51827517)
chr3 (540-612)||(41458780-41458852)
chr3 (539-625)||(11651333-11651419)
chr3 (535-618)||(6974686-6974766)
chr3 (535-581)||(11652323-11652369)
chr3 (535-581)||(17603198-17603244)
chr3 (527-581)||(46149651-46149705)
chr3 (535-579)||(21727508-21727552)
chr3 (535-581)||(11654006-11654052)
chr3 (527-601)||(37987255-37987329)
chr3 (527-581)||(48649150-48649204)
chr3 (535-604)||(17605736-17605805)
chr3 (527-576)||(48765052-48765101)
[»] chr4 (19 HSPs)
chr4 (530-625)||(31328827-31328922)
chr4 (539-625)||(24157934-24158020)
chr4 (537-605)||(17447714-17447782)
chr4 (536-615)||(4380633-4380712)
chr4 (535-603)||(53772837-53772905)
chr4 (536-619)||(4379986-4380069)
chr4 (536-605)||(43145986-43146055)
chr4 (535-579)||(19550316-19550360)
chr4 (527-625)||(5590964-5591062)
chr4 (527-581)||(24158797-24158851)
chr4 (527-625)||(48127308-48127406)
chr4 (535-581)||(55000717-55000763)
chr4 (535-581)||(55976196-55976242)
chr4 (527-601)||(40496033-40496107)
chr4 (535-581)||(45920333-45920379)
chr4 (527-580)||(37273172-37273225)
chr4 (539-579)||(2181794-2181834)
chr4 (535-591)||(5590123-5590179)
chr4 (535-591)||(48128191-48128247)
[»] chr1 (13 HSPs)
chr1 (527-625)||(25671957-25672055)
chr1 (59-265)||(19230848-19231036)
chr1 (536-625)||(50271716-50271805)
chr1 (535-581)||(37577622-37577668)
chr1 (559-603)||(26118726-26118770)
chr1 (539-603)||(36689020-36689084)
chr1 (539-603)||(36705120-36705184)
chr1 (536-619)||(40022180-40022263)
chr1 (535-581)||(24992721-24992767)
chr1 (535-581)||(47967891-47967937)
chr1 (539-594)||(36688424-36688480)
chr1 (539-594)||(36704524-36704580)
chr1 (535-579)||(37853114-37853158)
[»] chr6 (6 HSPs)
chr6 (535-625)||(33435369-33435459)
chr6 (541-611)||(10926177-10926247)
chr6 (540-609)||(13255053-13255122)
chr6 (541-618)||(10927160-10927237)
chr6 (539-603)||(20833921-20833985)
chr6 (536-594)||(20833326-20833385)
[»] chr2 (9 HSPs)
chr2 (537-625)||(34812043-34812130)
chr2 (536-611)||(8541782-8541857)
chr2 (288-396)||(34043100-34043208)
chr2 (536-618)||(9540973-9541055)
chr2 (536-611)||(9540362-9540437)
chr2 (541-611)||(20632856-20632926)
chr2 (535-611)||(26588268-26588345)
chr2 (535-579)||(16692952-16692996)
chr2 (535-579)||(15902860-15902904)
[»] chr5 (16 HSPs)
chr5 (527-625)||(22799692-22799790)
chr5 (537-625)||(41045415-41045503)
chr5 (527-618)||(31036083-31036174)
chr5 (535-581)||(9407279-9407325)
chr5 (527-625)||(31082676-31082774)
chr5 (535-611)||(234730-234807)
chr5 (535-611)||(237766-237843)
chr5 (535-578)||(16538965-16539008)
chr5 (535-581)||(1283476-1283522)
chr5 (527-581)||(2313968-2314022)
chr5 (535-581)||(19359733-19359779)
chr5 (527-625)||(19366498-19366596)
chr5 (535-611)||(235423-235500)
chr5 (535-611)||(237072-237149)
chr5 (536-605)||(29088570-29088639)
chr5 (541-581)||(19129531-19129571)
[»] chr7 (7 HSPs)
chr7 (535-618)||(31954233-31954316)
chr7 (527-625)||(31955150-31955248)
chr7 (535-581)||(13785570-13785616)
chr7 (535-581)||(21493027-21493073)
chr7 (534-601)||(23901186-23901253)
chr7 (535-582)||(47718934-47718981)
chr7 (535-601)||(36379644-36379710)
[»] chr8 (8 HSPs)
chr8 (539-612)||(531421-531494)
chr8 (288-407)||(4045995-4046114)
chr8 (535-579)||(32414502-32414546)
chr8 (535-579)||(39860142-39860186)
chr8 (535-581)||(8373669-8373715)
chr8 (535-581)||(28929875-28929921)
chr8 (535-611)||(8372943-8373020)
chr8 (527-576)||(31641533-31641582)
[»] scaffold0418 (1 HSPs)
scaffold0418 (527-601)||(5927-6001)
[»] scaffold0096 (1 HSPs)
scaffold0096 (535-611)||(39925-40002)
[»] scaffold0085 (1 HSPs)
scaffold0085 (535-576)||(22052-22093)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 30222129 - 30222031
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  30222129 tgtcaatagattcgttgataccaaattttaagcgttgatttcttttaatctgaaggcttatatttgttcatttaaaatatcatgtaaaccacctaagag 30222031  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 535 - 624
Target Start/End: Original strand, 48648233 - 48648322
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaaga 624  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||| |||||    
T  48648233 gattcgttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccacttaaga 48648322  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 535 - 625
Target Start/End: Complemental strand, 51827517 - 51827427
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    ||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||| ||||||    
T  51827517 gattcgttgtcaccaaatcttaaccgttgatttctttttatctaaagacttatatttgttcatttagaatatcatatgaaccacttaagag 51827427  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 612
Target Start/End: Complemental strand, 41458852 - 41458780
Alignment:
Q  540 gttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgta 612  Q
    ||||||||||||| |||| |||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  41458852 gttgacaccaaatcttaatcgttgatttcttttgatccaaaggcttatatttattcatttaaaatatcatgta 41458780  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 625
Target Start/End: Original strand, 11651333 - 11651419
Alignment:
Q  539 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||| | ||||| |||| |||||| ||||||    
T  11651333 cgttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccacgtaagag 11651419  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 618
Target Start/End: Complemental strand, 6974766 - 6974686
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 618  Q
    |||||||||||||||||| |||| ||   ||||||||| ||| |||| ||||||||| ||||||||||||||||||| ||||||    
T  6974766 gattcgttgacaccaaatcttaatcg---atttcttttgatccaaaggcttatatttattcatttaaaatatcatgttaaccac 6974686  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 11652323 - 11652369
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||    
T  11652323 gattcgttgacaccaaatcctaagcgttcatttcttttaatctaaag 11652369  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 17603198 - 17603244
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||    
T  17603198 gattcgttgacaccaaatcttaaacgttcatttcttttaatctaaag 17603244  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 581
Target Start/End: Original strand, 46149651 - 46149705
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    ||||||| |||||||||||||||||| |||| ||||  |||||||||||||||||    
T  46149651 tgtcaatggattcgttgacaccaaatcttaaacgttcgtttcttttaatctaaag 46149705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 21727552 - 21727508
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  21727552 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 21727508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 11654052 - 11654006
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| ||||  ||| ||||||||||||||||||    
T  11654052 gattcgttgacaccaaatcttaaatgttcatttcttttaatctaaag 11654006  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 601
Target Start/End: Original strand, 37987255 - 37987329
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 601  Q
    ||||||| ||||||||||||||||||||||  |||||||||  ||| ||| |||| || |||||| |||| ||||    
T  37987255 tgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaaggctaatatttattcacttaa 37987329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 581
Target Start/End: Complemental strand, 48649204 - 48649150
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||| ||||||||||||||||||| |||| |||||||||| ||| ||| ||||    
T  48649204 tgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatccaaag 48649150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 604
Target Start/End: Original strand, 17605736 - 17605805
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaat 604  Q
    |||||||||||||||||||| || |||  ||||| ||||||| ||||||| |||||| || | |||||||    
T  17605736 gattcgttgacaccaaatttcaaccgtctatttcatttaatcaaaagactcatatttatttacttaaaat 17605805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 576
Target Start/End: Complemental strand, 48765101 - 48765052
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatc 576  Q
    ||||||| |||||||||||||||||| |||| ||||||||  ||||||||    
T  48765101 tgtcaatggattcgttgacaccaaatcttaaccgttgattgtttttaatc 48765052  T

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Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 530 - 625
Target Start/End: Original strand, 31328827 - 31328922
Alignment:
Q  530 caatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  31328827 caatagattcgttgacaccaaattttaaacgttgatttcttttaatctgaaggcttatatttgttcatttaaaatatcatgtaaatcacctaagag 31328922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 625
Target Start/End: Original strand, 24157934 - 24158020
Alignment:
Q  539 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||| ||||||    
T  24157934 cgttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccacttaagag 24158020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 537 - 605
Target Start/End: Original strand, 17447714 - 17447782
Alignment:
Q  537 ttcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaata 605  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| |  ||||||||||||||||||||||    
T  17447714 ttcgttgacaccaaatattaaccgttgatctcttttaatctaagggtttatatttgttcatttaaaata 17447782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 536 - 615
Target Start/End: Complemental strand, 4380712 - 4380633
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaac 615  Q
    ||||||||||||||||| |||| ||||||| |||||| |||||| | ||| ||||||||||||||||||  |||||||||    
T  4380712 attcgttgacaccaaatattaaccgttgatctcttttgatctaagggcttgtatttgttcatttaaaattgcatgtaaac 4380633  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 535 - 603
Target Start/End: Original strand, 53772837 - 53772905
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 603  Q
    |||||||||||||||||| |||| |||||||||||||| ||| |||| ||| | |||||||||||||||    
T  53772837 gattcgttgacaccaaatattaatcgttgatttcttttgatccaaaggcttttgtttgttcatttaaaa 53772905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 4379986 - 4380069
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacc 619  Q
    |||| |||||||||||| |||| ||||||| |||||| |||||| | ||| |||||||| |||||||||| ||||| |||||||    
T  4379986 attcattgacaccaaatgttaaccgttgatctcttttgatctaagggcttgtatttgtttatttaaaataccatgtgaaccacc 4380069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 605
Target Start/End: Original strand, 43145986 - 43146055
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaata 605  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||   ||||| |||||||||||||||||    
T  43145986 attcgttgacaccaaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaata 43146055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 579
Target Start/End: Original strand, 19550316 - 19550360
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  19550316 gattcgttgacaccaaattttaagcgttcatttctcttaatctaa 19550360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 5591062 - 5590964
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||  ||| ||||| | ||||||||||  ||||||||||||| |||||||  ||||||||| |||||| | ||||| |||| |||||| ||||||    
T  5591062 tgtcaatgaatttgttgatatcaaattttaactgttgatttcttttgatctaaatgcttatatttattcattaagaatataatgtgaaccacataagag 5590964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 581
Target Start/End: Complemental strand, 24158851 - 24158797
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||| ||||||||||||||||||| |||| |||||||||| ||| ||||||||    
T  24158851 tgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatctaaag 24158797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 625
Target Start/End: Original strand, 48127308 - 48127406
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||  ||| ||||| | ||||||||||  ||||||||||||| |||||||  ||||||||| |||||| | ||||| |||| |||||| ||||||    
T  48127308 tgtcaatgaatttgttgatatcaaattttaactgttgatttcttttgatctaaatgcttatatttattcattaagaatataatgtgaaccacataagag 48127406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 55000717 - 55000763
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||    
T  55000717 gattcgttgacaccaaatcttaaacgttcatttcttttaatctaaag 55000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 55976196 - 55976242
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||    
T  55976196 gattcgttgacaccaaatcttaaacgttcatttcttttaatctaaag 55976242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 601
Target Start/End: Complemental strand, 40496107 - 40496033
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 601  Q
    ||||||| ||||||||||||||||||||||  |||||||||  ||| ||| |||| || |||||| |||| ||||    
T  40496107 tgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaagtctaatatttattcacttaa 40496033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 45920333 - 45920379
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    ||||| |||||| ||||| ||||||||| ||||||||||||||||||    
T  45920333 gattcattgacatcaaatcttaagcgttcatttcttttaatctaaag 45920379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 37273172 - 37273225
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaa 580  Q
    ||||||| ||| |||||||||||||| |||| |||| |||| ||||||||||||    
T  37273172 tgtcaatggatccgttgacaccaaatcttaaacgttcattttttttaatctaaa 37273225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 579
Target Start/End: Original strand, 2181794 - 2181834
Alignment:
Q  539 cgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    |||||||||||||| ||||||||| |||||| |||||||||    
T  2181794 cgttgacaccaaatcttaagcgttcatttctcttaatctaa 2181834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 591
Target Start/End: Original strand, 5590123 - 5590179
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatattt 591  Q
    |||||||||||| |||||||||| |||||||||| ||| ||| |||| || ||||||    
T  5590123 gattcgttgacaacaaattttaatcgttgatttcatttgatccaaaggctaatattt 5590179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 591
Target Start/End: Complemental strand, 48128247 - 48128191
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatattt 591  Q
    |||||||||||| |||||||||| |||||||||| ||| ||| |||| || ||||||    
T  48128247 gattcgttgacaacaaattttaatcgttgatttcatttgatccaaaggctaatattt 48128191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 25672055 - 25671957
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||| |||||| ||||||    
T  25672055 tgtcaatagattcgttgacactaaatcttaagcgttgatttcttttcatctgaaggcttatatttattcatttaaaatatcatgtgaaccacataagag 25671957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 59 - 265
Target Start/End: Original strand, 19230848 - 19231036
Alignment:
Q  59 aatgttctaagctctttttaggtgttatatatctcattgtgtactggtttagcataaaagtctgaatgttaataaattaatctatcgagaaaattatttt 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||         ||||||   ||||     ||||||||||||||    
T  19230848 aatgttttaagctctttttaggtgttatatatctcattgtgtactggtttaccataaaa---------ttaata---taat-----gagaaaattatttt 19230930  T
Q  159 tagaaaatgtactttgatataaaactagattaaccatgt-aaaagtgtataaaagaaatatctgcaaacctttaa-ttgtatattttgacaaatatctat 256  Q
    |||||||||||||| |   |||||| | ||||||||||| |||||||||| |||||||| | ||||||| ||||| || |||||||| |||||||| |||    
T  19230931 tagaaaatgtacttgg--gtaaaac-aaattaaccatgtgaaaagtgtatgaaagaaatctatgcaaacttttaatttttatatttttacaaatatttat 19231027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 50271805 - 50271716
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    ||||||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||| | ||||| |||| |||||| ||||||    
T  50271805 attcgttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccacataagag 50271716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 37577668 - 37577622
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  37577668 gattcgttgacaccaaattttagacgttgatttctttttatctaaag 37577622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 603
Target Start/End: Original strand, 26118726 - 26118770
Alignment:
Q  559 cgttgatttcttttaatctaaagacttatatttgttcatttaaaa 603  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||    
T  26118726 cgttgatttcttttgatctaaaggcttttatttgttcatttaaaa 26118770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 36689084 - 36689020
Alignment:
Q  539 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 603  Q
    ||||||||| |||| |||| |||||||||| ||| ||||||||  ||||||||||||| ||||||    
T  36689084 cgttgacacaaaatattaaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaa 36689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 36705184 - 36705120
Alignment:
Q  539 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 603  Q
    ||||||||| |||| |||| |||||||||| ||| ||||||||  ||||||||||||| ||||||    
T  36705184 cgttgacacaaaatattaaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaa 36705120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 40022180 - 40022263
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacc 619  Q
    ||||||||||||| ||| |||  ||||||| |||||| ||||||   ||| ||||||||||||||||||| || || |||||||    
T  40022180 attcgttgacacctaatgttacccgttgatctcttttgatctaagagcttgtatttgttcatttaaaataccacgtgaaccacc 40022263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 24992767 - 24992721
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  24992767 gattcgttgacatcaaatcttaaacgttcatttcttttaatctaaag 24992721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 47967891 - 47967937
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| || |||||| |||||| |||||||||||    
T  47967891 gattcgttgacaccaaatcttgagcgttcatttctcttaatctaaag 47967937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 594
Target Start/End: Original strand, 36688424 - 36688480
Alignment:
Q  539 cgttgacaccaaatt-ttaagcgttgatttcttttaatctaaagacttatatttgtt 594  Q
    ||||||||||||||| |||| |||||||||| ||| |||| ||| ||||||||||||    
T  36688424 cgttgacaccaaattattaaccgttgatttcgtttcatctgaaggcttatatttgtt 36688480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 594
Target Start/End: Original strand, 36704524 - 36704580
Alignment:
Q  539 cgttgacaccaaatt-ttaagcgttgatttcttttaatctaaagacttatatttgtt 594  Q
    ||||||||||||||| |||| |||||||||| ||| |||| ||| ||||||||||||    
T  36704524 cgttgacaccaaattattaaccgttgatttcgtttcatctgaaggcttatatttgtt 36704580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 37853158 - 37853114
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    ||||||||||||||||||||||  | || ||||||||||||||||    
T  37853158 gattcgttgacaccaaattttagccatttatttcttttaatctaa 37853114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 535 - 625
Target Start/End: Original strand, 33435369 - 33435459
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||||| |||||||||| |||||| ||||||    
T  33435369 gattcgttgacaccaaatcttaactgttgatttctttttatctaaaggcttatatttattcatttagaatatcatgtgaaccacttaagag 33435459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 611
Target Start/End: Original strand, 10926177 - 10926247
Alignment:
Q  541 ttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 611  Q
    ||||||||||||| ||| ||||||||| |||| |||| |||||||||||||||||||||| ||||||||||    
T  10926177 ttgacaccaaattataaccgttgattttttttgatctgaagacttatatttgttcatttagaatatcatgt 10926247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 609
Target Start/End: Original strand, 13255053 - 13255122
Alignment:
Q  540 gttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcat 609  Q
    |||||||| ||||||||| |||||||||||||| |||| |||||||||||||| |||||||||| |||||    
T  13255053 gttgacactaaattttaaccgttgatttcttttgatctgaagacttatatttgctcatttaaaaaatcat 13255122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 541 - 618
Target Start/End: Complemental strand, 10927237 - 10927160
Alignment:
Q  541 ttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 618  Q
    |||||||||||| ||||  ||||||||||||| |||  ||| || ||||||| ||||||||||| |||||| ||||||    
T  10927237 ttgacaccaaatcttaactgttgatttcttttgatccgaaggctaatatttgctcatttaaaatctcatgtgaaccac 10927160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 20833985 - 20833921
Alignment:
Q  539 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 603  Q
    |||||||||||||| || | |||||||||| ||| ||||||||  ||||||||||||| ||||||    
T  20833985 cgttgacaccaaatattgaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaa 20833921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 594
Target Start/End: Original strand, 20833326 - 20833385
Alignment:
Q  536 attcgttgacaccaaatt-ttaagcgttgatttcttttaatctaaagacttatatttgtt 594  Q
    |||||||||||||||||| |||| |||||||||| ||| |||| ||| ||||||||||||    
T  20833326 attcgttgacaccaaattattaaccgttgatttcgtttgatctgaaggcttatatttgtt 20833385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 537 - 625
Target Start/End: Original strand, 34812043 - 34812130
Alignment:
Q  537 ttcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||||||||||| |||||| ||||||||||||||||| |||  |||||||||||||||| ||||||||||| |||||| ||||||    
T  34812043 ttcgttgacaccaaatcttaagctttgatttcttttaatctgaaggtttatatttgttcattt-aaatatcatgtgaaccacttaagag 34812130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 536 - 611
Target Start/End: Original strand, 8541782 - 8541857
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 611  Q
    |||||||||||| |||| |||| |||||||||||||| ||| ||| |||||||||| |||||||||||||||||||    
T  8541782 attcgttgacacaaaatcttaatcgttgatttcttttgatccaaaaacttatatttattcatttaaaatatcatgt 8541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 34043100 - 34043208
Alignment:
Q  288 gtactgatattgaaagtgtttgtttggtggctatctcttgtctcaccatatccgtcaagatggggacaaattccttctcagctgactgttttttggtaga 387  Q
    ||||||| | |||||| ||| ||||| | ||| |||||||||||||||||||   ||||||| |||||||||||||||||| |||  | ||||||| | |    
T  34043100 gtactgagactgaaagagttcgtttgatcgctgtctcttgtctcaccatatcttccaagatgaggacaaattccttctcagttgatcggtttttggaaaa 34043199  T
Q  388 cctatatgt 396  Q
    |||||||||    
T  34043200 cctatatgt 34043208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 9541055 - 9540973
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 618  Q
    ||||||||||||||||| |||  ||||||| |||||| |||  | | |||||||||||||||||| |||||||||| ||||||    
T  9541055 attcgttgacaccaaatcttagccgttgatatcttttgatccgatggcttatatttgttcatttagaatatcatgtgaaccac 9540973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 611
Target Start/End: Original strand, 9540362 - 9540437
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 611  Q
    ||||||||||||||||| |||| | ||||||||| || |||| ||| |||||||||| ||||||| || |||||||    
T  9540362 attcgttgacaccaaatcttaaccattgatttctcttgatctgaaggcttatatttgctcatttagaaaatcatgt 9540437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 611
Target Start/End: Complemental strand, 20632926 - 20632856
Alignment:
Q  541 ttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 611  Q
    |||||| ||||| || | |||||||||| ||| ||||||||  ||||||||||||| ||||||||||||||    
T  20632926 ttgacatcaaatattgaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaatatcatgt 20632856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 611
Target Start/End: Original strand, 26588268 - 26588345
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 611  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  26588268 gattcgttgacaccaaatattaaccgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 26588345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 16692996 - 16692952
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  16692996 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 16692952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 15902904 - 15902860
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    ||||||||||||| |||| ||||||||| |||||| |||||||||    
T  15902904 gattcgttgacacaaaatcttaagcgttcatttctcttaatctaa 15902860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 22799790 - 22799692
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||  ||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||| |||||| | ||||| |||| |||||| ||||||    
T  22799790 tgtcaatgaattcgttgacaccaaatcttaactgttgatttcttttgatctaaagacttatatttattcattaagaatataatgtgaaccacataagag 22799692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 537 - 625
Target Start/End: Original strand, 41045415 - 41045503
Alignment:
Q  537 ttcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||| | ||||| |||| |||||| ||||||    
T  41045415 ttcgttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccacataagag 41045503  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 527 - 618
Target Start/End: Complemental strand, 31036174 - 31036083
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 618  Q
    ||||||| |||| ||| ||| ||||| |||| |||||||||||||| || ||||| |||||||||||| ||||| ||||| |||| ||||||    
T  31036174 tgtcaatcgatttgttaacatcaaatcttaatcgttgatttcttttgatataaaggcttatatttgttgatttagaatatgatgtgaaccac 31036083  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 9407279 - 9407325
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  9407279 gattcgttgacaccaaatcttaagcgttcatttcttttaatctaaag 9407325  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 31082774 - 31082676
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||  ||||||||||||||||| ||||   |||||||||||| |||||| | ||||||||| |||||| | ||||| |||| |||||| ||||||    
T  31082774 tgtcaatgaattcgttgacaccaaatcttaactattgatttcttttgatctaagggcttatatttattcattaagaatataatgtgaaccacataagag 31082676  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 611
Target Start/End: Original strand, 234730 - 234807
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 611  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  234730 gattcgttgacaccaaatattaaccgttgatttcgttttatctaatggtttacatttgttcaattaaaagtatcatgt 234807  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 611
Target Start/End: Complemental strand, 237843 - 237766
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 611  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  237843 gattcgttgacaccaaatattaaccgttgatttcgtttcatctaatggtttacatttgttcaattaaaagtatcatgt 237766  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 578
Target Start/End: Complemental strand, 16539008 - 16538965
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatcta 578  Q
    |||||||||||||||||| |||| |||| |||||||||||||||    
T  16539008 gattcgttgacaccaaatcttaaacgttcatttcttttaatcta 16538965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 1283522 - 1283476
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||||    
T  1283522 gattcgttgacaccaaatcttaaacgttcatttattttaatctaaag 1283476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 581
Target Start/End: Original strand, 2313968 - 2314022
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||| |||||| |||||||||||| |||| |||| |||||| |||||||||||    
T  2313968 tgtcaacagattcattgacaccaaatcttaaacgttcatttctcttaatctaaag 2314022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 19359733 - 19359779
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| |||| |||||||||| ||| ||||||||    
T  19359733 gattcgttgacaccaaatattaaccgttgatttcgtttgatctaaag 19359779  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 19366596 - 19366498
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    |||||||  |||||||||||  |||| ||||  | ||||||||||| |||||||| ||||| ||| |||||| | ||||| |||| |||||| ||||||    
T  19366596 tgtcaatgaattcgttgacattaaatcttaactgctgatttcttttgatctaaaggcttatgtttattcattaagaatataatgtgaaccacataagag 19366498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 611
Target Start/End: Complemental strand, 235500 - 235423
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 611  Q
    |||||||||||| ||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  235500 gattcgttgacatcaaatattaaccgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 235423  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 611
Target Start/End: Original strand, 237072 - 237149
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 611  Q
    |||||||||||| ||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  237072 gattcgttgacatcaaatattaaccgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 237149  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 605
Target Start/End: Complemental strand, 29088639 - 29088570
Alignment:
Q  536 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaata 605  Q
    ||||||||||||  ||| |||| ||||||| |||||| ||||||   ||||| |||||||||||||||||    
T  29088639 attcgttgacacttaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaata 29088570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 581
Target Start/End: Complemental strand, 19129571 - 19129531
Alignment:
Q  541 ttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||| ||||| ||| ||||||||||||||||||    
T  19129571 ttgacaccaaatcttaagtgttcatttcttttaatctaaag 19129531  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 535 - 618
Target Start/End: Complemental strand, 31954316 - 31954233
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 618  Q
    |||||||||||||||||| |||| |||||||||||||| || ||||| |||| ||||||| ||||| |||||||||| ||||||    
T  31954316 gattcgttgacaccaaatcttaaccgttgatttctttttatttaaaggcttacatttgttgatttagaatatcatgtgaaccac 31954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 31955248 - 31955150
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagag 625  Q
    ||||||| ||||||||||||  |||| ||||  ||||||||||||| |||||||  ||||||||| |||||| | ||||| |||| |||||| ||||||    
T  31955248 tgtcaattgattcgttgacattaaatcttaactgttgatttcttttgatctaaaagcttatatttattcattaagaatataatgtgaaccacataagag 31955150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 13785616 - 13785570
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||    
T  13785616 gattcgttgacaccaaatcttaagcgttaatttctcttaatctaaag 13785570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 21493027 - 21493073
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||    
T  21493027 gattcgttgacaccaaatcttaagcgttaatttctcttaatctaaag 21493073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 23901186 - 23901253
Alignment:
Q  534 agattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 601  Q
    |||||||||||||||||||||||  |||||||||  ||| ||||||||  | ||||||||||| ||||    
T  23901186 agattcgttgacaccaaattttatccgttgattttatttgatctaaaggttaatatttgttcacttaa 23901253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 47718934 - 47718981
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaaga 582  Q
    |||||||||||||||||| ||||  ||| |||||||||||||||||||    
T  47718934 gattcgttgacaccaaatcttaaatgttcatttcttttaatctaaaga 47718981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 601
Target Start/End: Complemental strand, 36379710 - 36379644
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 601  Q
    ||||||||||||||||||||||  |||||||||  ||| ||||||||  | ||||||||||| ||||    
T  36379710 gattcgttgacaccaaattttatccgttgattttatttgatctaaaggttaatatttgttcacttaa 36379644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 539 - 612
Target Start/End: Complemental strand, 531494 - 531421
Alignment:
Q  539 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgta 612  Q
    |||||||||||||| |||| ||| |||||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  531494 cgttgacaccaaatcttaatcgtggatttcttttgatccaaaggcttatatttattcatttaaaatatcatgta 531421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 288 - 407
Target Start/End: Complemental strand, 4046114 - 4045995
Alignment:
Q  288 gtactgatattgaaagtgtttgtttggtggctatctcttgtctcaccatatccgtcaagatggggacaaattccttctcagctgactgttttttggtaga 387  Q
    ||||||| | |||||| ||| ||||| | ||| ||||||||||||||||||| | ||||||| |||||||||||||||| | |||  | ||||||| | |    
T  4046114 gtactgagactgaaagagttcgtttgatcgctgtctcttgtctcaccatatctgccaagatgaggacaaattccttctccgttgatcggtttttggaaaa 4046015  T
Q  388 cctatatgtgcatgtcaatt 407  Q
    ||||||||| | ||||||||    
T  4046014 cctatatgtacgtgtcaatt 4045995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 32414546 - 32414502
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  32414546 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 32414502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 579
Target Start/End: Original strand, 39860142 - 39860186
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 579  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  39860142 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 39860186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 8373715 - 8373669
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| |||| |||||||||| ||| ||||||||    
T  8373715 gattcgttgacaccaaatattaaccgttgatttcgtttgatctaaag 8373669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 28929875 - 28929921
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 581  Q
    |||||||||||||||||| |||| | || ||||||||||||||||||    
T  28929875 gattcgttgacaccaaatcttaaactttcatttcttttaatctaaag 28929921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 611
Target Start/End: Original strand, 8372943 - 8373020
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 611  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| | ||||||| |||||| ||||||||    
T  8372943 gattcgttgacaccaaatattaatcgttgatttcgtttgatctaatggtttacaattgttcaattaaaagtatcatgt 8373020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 576
Target Start/End: Original strand, 31641533 - 31641582
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatc 576  Q
    ||||||| |||||||||||||||||| |||| ||||||||  ||||||||    
T  31641533 tgtcaatggattcgttgacaccaaatcttaaccgttgattgtttttaatc 31641582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 601
Target Start/End: Original strand, 5927 - 6001
Alignment:
Q  527 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 601  Q
    ||||||| ||||||||||||||||||||||  |||||||||  ||| ||| ||||||| |||||| |||| ||||    
T  5927 tgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaagactaatatttattcacttaa 6001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 611
Target Start/End: Original strand, 39925 - 40002
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 611  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  39925 gattcgttgacaccaaatattaatcgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 40002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 576
Target Start/End: Complemental strand, 22093 - 22052
Alignment:
Q  535 gattcgttgacaccaaattttaagcgttgatttcttttaatc 576  Q
    ||||||||||||||||||||||| ||||||||  ||||||||    
T  22093 gattcgttgacaccaaattttaaccgttgattgtttttaatc 22052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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