View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879-Insertion-5 (Length: 496)
Name: NF4879-Insertion-5
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 475
Target Start/End: Complemental strand, 4844082 - 4843615
Alignment:
| Q |
8 |
ctggcatcgtgtttgtgtctgtcaacacaatgacaaaaacttgtggccttagagctgataaagctgcagattgacttatttggagagcgcggctcggata |
107 |
Q |
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| T |
4844082 |
ctggcatcgtgtttgtgtctgtcaacacaatgacgaaaacttgtggccttagagctgataaagctgcagattgacttatttggagagcgcggctcggata |
4843983 |
T |
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| Q |
108 |
atggttgatatttccaagtccaacagtattgtggttgagattagagaaatcaactcttcctgtcaaaactgctgaaactatagagnnnnnnntctcgacc |
207 |
Q |
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| T |
4843982 |
atggttgaaatttccaagtccaacagtattgtggtagagattagagaaatcaactcttcctgtcaaaactgctgaaactatagagaaaaaaatctcgacc |
4843883 |
T |
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| Q |
208 |
taaaagcccaaacacgttgcatttctttccacagatgaaaattgaaattcaaagaaacctcgacctaaaaaggacagaaaagaagagggtcttggtcaaa |
307 |
Q |
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| T |
4843882 |
taaaagcccaaacacgttgcatttctttccacagatgaaaattgaaatccaaagaaacctcgacctaaaaaggacagaaaaaaagagggtcttggtcaaa |
4843783 |
T |
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| Q |
308 |
gaagtatttaacnnnnnnnggataatattcatcacatttccatgacaatttacacatcaagactctttttggcaatatcaacttttgtgcttatagtgaa |
407 |
Q |
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| T |
4843782 |
gaagtatttaactttttttggataatattcatcacatttccatgacaatttacacatcaagactctttttggcaatatcaacttttgtgcttatagtgaa |
4843683 |
T |
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| Q |
408 |
taactataannnnnnnnnnnnnnaagaaataacgataactttttgtttgacagtaaataatttataac |
475 |
Q |
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| T |
4843682 |
taactataattttttatttatttaagaaataacgataactttttgtttgccagtaaataacttataac |
4843615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 4813597 - 4813510
Alignment:
| Q |
327 |
ggataatattcatcacatttccatgacaatttacacatcaagactct--ttttggcaatatcaacttttgtgcttatagtgaataact |
412 |
Q |
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| T |
4813597 |
ggataatattcatcacattcccatgccaatttacacactaaaactcttcttttggatagatcgacatttgagcttatagtgaataact |
4813510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 4824306 - 4824272
Alignment:
| Q |
149 |
tagagaaatcaactcttcctgtcaaaactgctgaa |
183 |
Q |
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| T |
4824306 |
tagagaaatcaactcttcttgtcaaaactgctgaa |
4824272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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