View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4879-Insertion-6 (Length: 490)

Name: NF4879-Insertion-6
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4879-Insertion-6
NF4879-Insertion-6
[»] chr1 (1 HSPs)
chr1 (8-490)||(34055183-34055665)
[»] chr3 (10 HSPs)
chr3 (329-429)||(47381252-47381351)
chr3 (146-333)||(47381702-47381872)
chr3 (329-425)||(47816721-47816816)
chr3 (163-250)||(47817261-47817348)
chr3 (8-94)||(47382691-47382777)
chr3 (331-411)||(45113354-45113434)
chr3 (427-483)||(47381173-47381229)
chr3 (269-333)||(47817195-47817259)
chr3 (427-489)||(47816634-47816694)
chr3 (139-236)||(45114470-45114569)
[»] chr8 (3 HSPs)
chr8 (331-429)||(40243962-40244059)
chr8 (138-302)||(40244398-40244561)
chr8 (9-94)||(40245405-40245490)


Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 34055183 - 34055665
Alignment:
Q  8 ggtataaccagcatatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcatagaatggtagatg 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055183 ggtataaccagcatatgcatgaagtgagccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcatagaatggtagatg 34055282  T
Q  108 aacaatagacaagaacttctggtccggagatggtagataaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatag 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34055283 aacaatagacaagaactgctggtccggagatggtagataaacaatacatgtgcctgttgaagttgaactcgagaaccagcttcggcattcaaatctatag 34055382  T
Q  208 ctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055383 ctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaag 34055482  T
Q  308 tacattttgattcattcatattcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055483 tacattttgattcattcatattcacagttggctttggcactttcactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattc 34055582  T
Q  408 atcctagagttgtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttcg 490  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055583 atcctagtgttgtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttcg 34055665  T

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Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 47381351 - 47381252
Alignment:
Q  329 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctccta 428  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  47381351 tcacagttggctctggcactttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcat-ctagtgttgtggctccta 47381253  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 146 - 333
Target Start/End: Complemental strand, 47381872 - 47381702
Alignment:
Q  146 aaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataa 245  Q
    |||||||||  |||| ||||||||| ||||||| ||| |||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47381872 aaacaatacctgtgcatgttgaagtcgaactcgggaaccagcttcatcaatcaaatctatagctttgtcaggcaaaaatcgatcactgcagaagacataa 47381773  T
Q  246 ttattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 333  Q
    |||||                  |||||||||||||||||| ||||||||||||||||   ||||| |||||||||||||||||||||    
T  47381772 ttatt-----------------attaagataaacagcaggtggaaaacaacaagatacagggtacagtttgattcattcatattcaca 47381702  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 47816816 - 47816721
Alignment:
Q  329 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctc 425  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  47816816 tcacagttggctctagcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc 47816721  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 47817348 - 47817261
Alignment:
Q  163 gttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattatt 250  Q
    |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47817348 gttgaagtcgaactcgggaaccagcttcgtcaatcaaatctatagctttgtcaggcaaaaatcgaccactgcagaagacataattatt 47817261  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 47382777 - 47382691
Alignment:
Q  8 ggtataaccagcatatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcat 94  Q
    |||||||||| ||||| || || ||||||||||||||||||||||||||   |||||||||||||| ||||||||||||| ||||||    
T  47382777 ggtataaccaacatatccaggaggtgaaccgatgagtttggagactgtgtgccgttccataaattcgctcatgtcaagccgaatcat 47382691  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 331 - 411
Target Start/End: Complemental strand, 45113434 - 45113354
Alignment:
Q  331 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcc 411  Q
    |||||||| | ||| |||||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||    
T  45113434 acagttggttctggtactttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatcc 45113354  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 47381229 - 47381173
Alignment:
Q  427 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat 483  Q
    ||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||    
T  47381229 tatttacttaagagatgaaagttgtggcaaattcagcatatgcacaaccatatatat 47381173  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 47817259 - 47817195
Alignment:
Q  269 ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 333  Q
    |||||||||||||||||| ||||||||||||||||   ||||| ||| |||||||||||||||||    
T  47817259 ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttaattcattcatattcaca 47817195  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 489
Target Start/End: Complemental strand, 47816694 - 47816634
Alignment:
Q  427 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttc 489  Q
    |||||||||||||||||||| |||||||||| | |||||||  | | ||||||||||||||||    
T  47816694 tatttacttaagagatggaagttgtggcaagctgagcatat--acagccatatatatgtcttc 47816634  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 45114569 - 45114470
Alignment:
Q  139 ggtagataaacaatacac--gtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcag 236  Q
    |||||| |||||||| ||  |||| ||||||||  | ||||| ||| |||||||  || ||||||| || |||||||| ||||||||| |||||||||||    
T  45114569 ggtagacaaacaatatacctgtgcatgttgaagacggactcgtgaaccagcttcatcaatcaaatcaatggctttgtcgggcaaaaatcgatcactgcag 45114470  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 429
Target Start/End: Complemental strand, 40244059 - 40243962
Alignment:
Q  331 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctat 429  Q
    |||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40244059 acagttggctctggcactttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcat-ctagagttgtggctcctat 40243962  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 40244561 - 40244398
Alignment:
Q  138 tggtagataaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcaga 237  Q
    |||| ||| ||||||||  |||| ||||||||| | ||||| ||| |||||||  || ||||||||||||||||||||||||||||| |||| ||||| |    
T  40244561 tggtggatgaacaatacctgtgcatgttgaagtcggactcgggaaccagcttcatcaatcaaatctatagctttgtcaggcaaaaatcgatcgctgcaaa 40244462  T
Q  238 agacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagata 302  Q
    || ||||||||||||||||  ||||||| |||| | |||||||||| |||||| | |||||||||    
T  40244461 agtcataattattttatgagtgagaaaacacttga-ataaacagcaagtagaagataacaagata 40244398  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 40245490 - 40245405
Alignment:
Q  9 gtataaccagcatatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcat 94  Q
    ||||||||| ||||| |  || ||||||| ||||||||||||||||||   | |||||| ||||||||||||||||| | ||||||    
T  40245490 gtataaccaacatatcctggaggtgaaccaatgagtttggagactgtgtgcctttccatgaattcactcatgtcaagacgaatcat 40245405  T

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