View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4879-Insertion-8 (Length: 375)

Name: NF4879-Insertion-8
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4879-Insertion-8
NF4879-Insertion-8
[»] chr2 (1 HSPs)
chr2 (8-375)||(42935538-42935908)


Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 42935538 - 42935908
Alignment:
Q  8 aacttagagatctcttgcaccattttctcatcactttcagccacatgaatctcctctccaccaattagattcattagaaacttaacttgtcccaactctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935538 aacttagagatctcttgcaccattttctcatcactttcagccacatgaatctcctctccaccaattagattcattagaaacttaacttgtcccaactctt 42935637  T
Q  108 gttccaagctctctttcaacacattcaacgttgccaacgtagcttcgcggttcttaacaacaccaccaacattttcatgatca---acatcagtagtatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||   ||||||| ||||||    
T  42935638 gttccaagctctctttcaacacattcaacgttgccaacgtagcttcacggttcttaacaacaccaccgacattttcatgatcaaccacatcagaagtatt 42935737  T
Q  205 ggtctttggctccatcacagttcctgatgctgtaacaacatcatcctcttggatcactttttcttcttcgaaccgaacttgtttcacaacttcatcatct 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935738 ggtctttggctccatcacagttcctgatgctgtaacaacagcatcctcttggatcactttttcttcttcgaaccgaacttgtttcacaacttcatcatct 42935837  T
Q  305 ttgctttgatcctttgggaatacaggcacaagttccaatccatcttcattgaaattccagccactgattct 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935838 ttgctttgatcctttgggaatacaggcacaagttccaatccatcttcattgaaattccagccactgattct 42935908  T

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