View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879_high_12 (Length: 238)
Name: NF4879_high_12
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48593268 - 48593048
Alignment:
| Q |
1 |
ttgagcctttcggaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttat |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593268 |
ttgagcctttcagaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttat |
48593169 |
T |
|
| Q |
101 |
gatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttctagtaactatatccacctcctcttgtgcttttttcagcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593168 |
gatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttctagtaactatatccacctcctcttgtgcttttttcagcacc |
48593069 |
T |
|
| Q |
201 |
cttggattgttaaacagttct |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
48593068 |
cttggattgttaaacagttct |
48593048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48597879 - 48597659
Alignment:
| Q |
1 |
ttgagcctttcggaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597879 |
ttgagcctttcagaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttat |
48597780 |
T |
|
| Q |
101 |
gatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttctagtaactatatccacctcctcttgtgcttttttcagcacc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597779 |
gatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttctagtaactatatccacctcctcttgtgcttttttcagcacc |
48597680 |
T |
|
| Q |
201 |
cttggattgttaaacagttct |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
48597679 |
cttggattgttaaacagttct |
48597659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23230990 - 23231210
Alignment:
| Q |
1 |
ttgagcctttcggaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttat |
100 |
Q |
| |
|
|||| ||||| |||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |
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|
| T |
23230990 |
ttgatccttttggaaccattttaccatcaacaacacaatcttccattcctttcctcataatcatcggtatcggagggtgaagcctcatggtttcttttat |
23231089 |
T |
|
| Q |
101 |
gatagcatgtatataaggaaggtttggaccgtcttcttcacacacaagtctttcctttctagtaactatatccacctcctcttgtgcttttttcagcacc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||| | || ||||||||||| |||||||||| |||| |
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| T |
23231090 |
gatggcatgtatataaggaaggtttggactgtcttcttcacacactaatctttcctttcctacaactctctctacctcctcttgagcttttttcaacacc |
23231189 |
T |
|
| Q |
201 |
cttggattgttaaacagttct |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
23231190 |
cttggattgttaaacagttct |
23231210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 23223259 - 23223465
Alignment:
| Q |
15 |
atcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatat |
114 |
Q |
| |
|
||||| || ||||| ||||||||||||| |||| ||||| ||||||||||| || || |||||||||| |||||||||||| || || ||||||| |
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| T |
23223259 |
atcattttcccatcgaccacacaatcttttgttcctttcctagcaatcatcggtagtggtgggtgaagcctcaatgtttcttttataatggcttgtatat |
23223358 |
T |
|
| Q |
115 |
aaggaaggtttggaccgtcttcttcacacacaagtctttcctttctagtaactatatccacctcctcttgtgcttttttcagcacccttggattgttaaa |
214 |
Q |
| |
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|||||||||||||| |||| ||||||| || ||||||||||| | | | | | |||||||| ||||||||||| ||||| || |||||||||| || |
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| T |
23223359 |
aaggaaggtttggaatgtctgcttcacatactagtctttccttccctattattctctccacctcttcttgtgctttcttcagtactattggattgttgaa |
23223458 |
T |
|
| Q |
215 |
cagttct |
221 |
Q |
| |
|
||||||| |
|
|
| T |
23223459 |
cagttct |
23223465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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