View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879_high_6 (Length: 277)
Name: NF4879_high_6
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 36223505 - 36223254
Alignment:
| Q |
19 |
actgtagtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctgcaaaagttttaacatagacctt |
118 |
Q |
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| T |
36223505 |
actgtagtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctgcaaatgttttaacatagacctt |
36223406 |
T |
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| Q |
119 |
agggacaattttgacttgttttaagttcaatcgtctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgact |
218 |
Q |
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| T |
36223405 |
agggacaattttgacttgttttaagttcaatcgtctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgact |
36223306 |
T |
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| Q |
219 |
ctttaatacttattagattgttgttgtgggaattgatgtttgttctcttgca |
270 |
Q |
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| T |
36223305 |
ctttaatacttattagattgttgttgtgggaattgatgtttgttctcttgca |
36223254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 36227322 - 36227201
Alignment:
| Q |
151 |
gtctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttg--tggg |
248 |
Q |
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| T |
36227322 |
gtctcgaggaggatgacgatgcaaaggctgcaattgcaatttcagtctccaaactcactcaggtgactctttagtacttattagattgttgttgtatggg |
36227223 |
T |
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| Q |
249 |
aattgatgtttgttctcttgca |
270 |
Q |
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| T |
36227222 |
agttgatgtttgttctcttgca |
36227201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 39426039 - 39425909
Alignment:
| Q |
19 |
actgtagtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctgcaa--------aagttttaaca |
110 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
39426039 |
actgttgtaggttttaattctttcgtagatcaatgatcattcaattgtttcaattgtttgtttgaaaagttatccctgctagcagttttaagttttaaca |
39425940 |
T |
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| Q |
111 |
tagaccttagggacaattttgacttgtttta |
141 |
Q |
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| T |
39425939 |
tagatcttagggacaattttgacttgtttta |
39425909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 39426701 - 39426636
Alignment:
| Q |
25 |
gtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttat |
91 |
Q |
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| T |
39426701 |
gtaggttttaattctt-cttaaatcaatgatcattcaattctttcagtagtttgttcgaaaagttat |
39426636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 9287393 - 9287323
Alignment:
| Q |
25 |
gtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctg |
96 |
Q |
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| T |
9287393 |
gtaggttttaattctt-ctcagatcaatgatcattcaattcttctaattatttgttcgaaaagttacccctg |
9287323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 9300717 - 9300646
Alignment:
| Q |
25 |
gtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctg |
96 |
Q |
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| T |
9300717 |
gtaggttttaattctttcacagatcaatgatcattcaattcttctaattatttgttcgaaaaattacccctg |
9300646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 9271525 - 9271464
Alignment:
| Q |
25 |
gtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaa |
86 |
Q |
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| T |
9271525 |
gtaggttttaattctttatcaaatcaatgatcattcaattcttgtaattatttgttcaaaaa |
9271464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 9300623 - 9300583
Alignment:
| Q |
99 |
aaagttttaacatagaccttagggacaattttgacttgttt |
139 |
Q |
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| T |
9300623 |
aaagttttaacataaacattaaggacaattttgacttgttt |
9300583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 30547869 - 30547812
Alignment:
| Q |
159 |
gaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtga |
216 |
Q |
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| T |
30547869 |
gaggatgatgatgccaaagccgcaattgcaatttccgtatccgaagttactcaggtga |
30547812 |
T |
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