View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879_low_12 (Length: 251)
Name: NF4879_low_12
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 41980625 - 41980385
Alignment:
| Q |
1 |
ttggagtacgaattgagtgtggacgcgaagatggactatatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagttt |
100 |
Q |
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| T |
41980625 |
ttggagtacgaattgagtgtggacgcgaagatggactatatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagttt |
41980526 |
T |
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| Q |
101 |
ttgatgtgtttatcaatggaaacaatgtaacaagagtcgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaattt |
200 |
Q |
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| T |
41980525 |
ttgatgtgtttatcaatggaaacaatgtaacaagagttgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaattt |
41980426 |
T |
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| Q |
201 |
gagtagtaatgttttggggattaagcttgttactgtctctg |
241 |
Q |
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| T |
41980425 |
gagtagtaatgttttggggattaagcttgttactgtttctg |
41980385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 22084350 - 22084465
Alignment:
| Q |
91 |
gagagagtttttgatgtgtttatcaatggaaacaatgtaacaagagtcgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactg |
190 |
Q |
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| T |
22084350 |
gagagggtgtttgatgtgttcatcaatggtgataatttgactagagtagatatttacaaacaagttgggggtttagctgcgtttacttggcatcatacag |
22084449 |
T |
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| Q |
191 |
tgaaaaatttgagtag |
206 |
Q |
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| T |
22084450 |
tgaagaatttgagtag |
22084465 |
T |
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