View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879_low_2 (Length: 337)
Name: NF4879_low_2
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 24481923 - 24482219
Alignment:
| Q |
22 |
gatacatagattatgacacataatgaagagatgatgataatttgtcaagtatgaggaaaaacttcatattgtatgctactgttgacgtagagcaatatat |
121 |
Q |
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| T |
24481923 |
gatacatagattatgactcataaggaagagatgatgataatttgtcaagtatgagtaaaaacttcatattgtatcctactgttgacgtagagcaatatat |
24482022 |
T |
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| Q |
122 |
aagtcagatgactcatatatctaatgtcttatgacttcaatagaagatgaaatatcagtttcaattatgtggtggttcttagcctaatgcaatcatacaa |
221 |
Q |
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| T |
24482023 |
aagtgagatgactcatatatctaatgtcttaagacttcaatagaagatgaaatatcaatttcaattatgtggtggttcttagcctaatgcaatcatagaa |
24482122 |
T |
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| Q |
222 |
cccattgtcggcttccaccaaagac--tagatattatgatgatttattttgttactaaaattctggcacgaagcaaatatattatacacgatgtcaa |
316 |
Q |
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| T |
24482123 |
cccattgtcggcttccaccgaagactatagatattatgatgatttattttgttactgaaattctggcacgaagcaaatatattatacacgatgtcaa |
24482219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 5062774 - 5062523
Alignment:
| Q |
18 |
cacagatacatagattatgacacataatgaagagatgatgataatttgtcaagtatgaggaaaaacttcatattgtatgctactgttgacgtagagcaat |
117 |
Q |
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| T |
5062774 |
cacagatacatagattatggcatttaacgaagagatgtt---aatttgtccagtatgagtaaaaaattcatattgtatgcaagtgttgt----------t |
5062688 |
T |
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| Q |
118 |
atataagtcagatgactcatatatctaatgtcttat-gacttcaatagaagatgaaatatcagtttcaattatgtggtggttcttagcctaatgcaa--- |
213 |
Q |
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| T |
5062687 |
atataagtgaggggactcatatatctaatgtcttaaagacttcagcagatgatgtaatatcaatttcacttatgtggcaggtcttagtctaatgtgaata |
5062588 |
T |
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| Q |
214 |
-----tcatacaacccattgtcggcttccaccaaagactagatattatgatgatttattttgtta |
273 |
Q |
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| T |
5062587 |
tgtgatcagacaacccattgtcgacttccaccaaagacttaatattacgatgatttgttttgtta |
5062523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 3395464 - 3395430
Alignment:
| Q |
118 |
atataagtcagatgactcatatatctaatgtctta |
152 |
Q |
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| T |
3395464 |
atataagtgagatgactcatatatctaatgtctta |
3395430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 38015951 - 38015910
Alignment:
| Q |
111 |
gagcaatatataagtcagatgactcatatatctaatgtctta |
152 |
Q |
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| T |
38015951 |
gagcaacatataagtgagatgactcatatatctaatgactta |
38015910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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