View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4879_low_5 (Length: 301)
Name: NF4879_low_5
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 92 - 286
Target Start/End: Original strand, 29580874 - 29581068
Alignment:
| Q |
92 |
caaagagatgcaaagaaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagca |
191 |
Q |
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| T |
29580874 |
caaaaagatgcaaagaaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagca |
29580973 |
T |
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| Q |
192 |
tgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactagtctcctttccgtttttcaacaaaaccaaggactt |
286 |
Q |
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| T |
29580974 |
tgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactaggctcctttccgtttttcaacaaaaccaaggactt |
29581068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 29613084 - 29612905
Alignment:
| Q |
107 |
aaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagcatgagttccagcaaca |
206 |
Q |
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| T |
29613084 |
aaaaggctaaccaattgtaatctggccactagatccatacttcgtaaatgtccatcctccacattgatagccgatatcattagcatgagttccagcaaca |
29612985 |
T |
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| Q |
207 |
aggattctcttggcgttcttattcaatggtatgaaaggtttactagtctcctttccgtttttcaacaaaaccaaggactt |
286 |
Q |
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| T |
29612984 |
aggattctcttggcgttcttattcaatggtatgaaaggtttactaggctcctttccatttttcaacaaaaccaacgactt |
29612905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 29613179 - 29613143
Alignment:
| Q |
12 |
tgatatgaactgatctcccaagattaatgaataattg |
48 |
Q |
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| T |
29613179 |
tgatatgaactgatctcccaagattattgaataattg |
29613143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 286
Target Start/End: Original strand, 25127338 - 25127468
Alignment:
| Q |
156 |
gtccatcctccacattgatagccgatatcattagcatgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactagtct |
255 |
Q |
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||||| |||||||||||| | || | || || |||||||||||| | |||||| |||||||| || ||||| |||||||| | ||||||| |||| | | |
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| T |
25127338 |
gtccaacctccacattgaaatccaagattatcagcatgagttccggtaacaagaattctcttagcattcttgttcaatggaagaaaaggttcactaatat |
25127437 |
T |
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| Q |
256 |
cctttccgtttttcaacaaaaccaaggactt |
286 |
Q |
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| T |
25127438 |
cttttccatttttcaacaaaaccaacgactt |
25127468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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