View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4879_low_6 (Length: 288)
Name: NF4879_low_6
Description: NF4879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4879_low_6 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 36222891 - 36223178
Alignment:
| Q |
1 |
attcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcattagtaatgaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36222891 |
attcacaagcaatcaagattgggagagaattaggagaaatcaagagagaagaaagagaaatcaatgtgattgtaaactatgttctcattagtaatgaaaa |
36222990 |
T |
|
| Q |
101 |
tctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaaaatagctaaccaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36222991 |
tctgagattacaagcttatatacaactacttatatggcttacttgcaatacaagtaatcaatc-aaactaactaactccatcaaaatagctaaccaaaaa |
36223089 |
T |
|
| Q |
201 |
ctaactgtttttaactactc-nnnnnnncaactaacttgaattaaaatacaacaaaagtaagaattataccatatttatcagttccttt |
288 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36223090 |
ctaactgtttttaactactctttttttccaactaacttgaattaaaatacaacaaaagtaagaattataccatatttatcagttccttt |
36223178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 36226937 - 36227157
Alignment:
| Q |
1 |
attcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcatta----gtaatg |
96 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36226937 |
attcacaagcaatcgagattgggagagaattaggggaaat-aagagagaagaaagagagatcaatgtgattgtaaactatgttctcattatttagtaatg |
36227035 |
T |
|
| Q |
97 |
aaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaaaatagctaacca |
196 |
Q |
| |
|
||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| | |
|
|
| T |
36227036 |
aaaatctaagattacaagcttatata-aacaacttatgtggcttacttgcaatacaagtaatcaatcaaaaccaaccaactcgatcaaaatagctaacaa |
36227134 |
T |
|
| Q |
197 |
aaaactaactgtttttaactact |
219 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
36227135 |
acaactaactgtttttaactact |
36227157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 13575558 - 13575506
Alignment:
| Q |
62 |
caatgtgattgtaaactatgttctcattagt-aatgaaaatctgagattacaa |
113 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
13575558 |
caatgtgattgtaaagtgtgttctcattagtgaatgaaaattagagattacaa |
13575506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 28067445 - 28067302
Alignment:
| Q |
69 |
attgtaaactatgttctcattagtaa-tgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaa |
167 |
Q |
| |
|
||||||||||||||| |||||||||| |||| || |||||||||| | || ||||||| || |||| | ||||||| ||||||||||||| | |||||| |
|
|
| T |
28067445 |
attgtaaactatgttttcattagtaaatgaagatatgagattacaggtttttatacaattatttatatgacttacttccaatacaagtaattattcaaaa |
28067346 |
T |
|
| Q |
168 |
ctaactaactccatcaaaatagctaaccaaaaactaactgtttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
28067345 |
ctaactaactccatcaaaatagctaacaaactaataactgtttt |
28067302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University