View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4880-Insertion-1 (Length: 1091)
Name: NF4880-Insertion-1
Description: NF4880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4880-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 866; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 8 - 1079
Target Start/End: Complemental strand, 2128959 - 2127876
Alignment:
| Q |
8 |
tttattttgctattcatttatacttgatttgtgcaatttttgtgattactgtgagctcaaaaagctaaagtttttgtgctttgttgcctcatgnnnnnnn |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2128959 |
tttattttgctattcatttatacttgatttgtgcaatttttgtgattactttgagctcaaaaagctaaagtttttgtgctttgttgcctcatgttttttt |
2128860 |
T |
|
| Q |
108 |
naagaattatcggaataagtgctctgtatgtttaaatacatttgaaaattcacgatgaactgtttgatttgatgaaatttttgtggcacagcttgttttg |
207 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2128859 |
taagaattaccggaataagtgctctgtatgtttaaatacatttgaaaattcacgatgaactgtttgatttgatgaaatttttgtggcacagcttgttttg |
2128760 |
T |
|
| Q |
208 |
tttagttgatagatccaaatattgttctaagctttctgtcatgtctaatctaacttcacaactatgagttttttccactctaggacaagacgttattctt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2128759 |
tttagttgatagatccaaatattgttctaagctttctgtcatgtctaatctaacttcacaactatgagttttttccactctaggacaagacgttattttt |
2128660 |
T |
|
| Q |
308 |
ccttctcaaattgtgagacaaattgtttatttgttcagtaaagtttaaactatttcaaatctgctatacatattttatttattctaccaaaggaaattgg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2128659 |
ccttctcaaattgtgagacaaattgtttatttgttcagtaaagttcaaactatttcaaatctgctatacatattttatttattctaccaaaggaaattgg |
2128560 |
T |
|
| Q |
408 |
catctggttatagcttatttgaagtttgttcattatatttttgaccaatagttttaactatattttggtcactgcaggtagatctccgggacagggtcgc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
2128559 |
catctggttatagcttatttgaagtttgttcattatattgttgaccaatagttttgactatattttggtcattgcaggtagatctccgggacagggccgc |
2128460 |
T |
|
| Q |
508 |
tctagagcaaatttttggttccacaatttaaggatgacgagagaagcta---nnnnnnnaccttcatattttgatgctcagttgaatatgactcgtgttt |
604 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
2128459 |
tctagagcaaatttttggttccacaacgtaaggatgacgagagaagctagctattttttaccttcatattttgatgctcagttgagtatgagtcgtgttt |
2128360 |
T |
|
| Q |
605 |
ttgtaataataatgaagaagactcactcttatagttgtccttgatcattgatattatagctgttacttatcgctttttactcatttatattgtagatttg |
704 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2128359 |
ttgtaataataatgaagaagactcactcttatagttgtccttgatcattgatattatagctgttacttatcgctttttactcatttatattgtagatttg |
2128260 |
T |
|
| Q |
705 |
atgcagtcatacattttgctggactgaaagcagtaggtgaaagtgcgcagaaaccgttactctactacaacaacaacttgattgggacaatcactctatt |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2128259 |
atgcagtcatacattttgctggactgaaagcagtaggtgaaagtgcgcagaaaccgttactctactacaacaacaacttgattgggacaatcactctatt |
2128160 |
T |
|
| Q |
805 |
ggaagtcatggctgctcatggatgcaagaaggtaagttccttcttgtttttaagtcctgcatggtagactttagctgcatcgagag-acaactttaatat |
903 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||| |
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|
| T |
2128159 |
ggaagtcatggctgctcatggatgcaagaaggtaagttccttcttgtttttaagtcctgcatgatagactttagttgcatcgagagaacaattttaatat |
2128060 |
T |
|
| Q |
904 |
gaacagatttctatgatactgcaatgtcttttgcttgttcattttttgcagagttccttat--atgcttaggatgcataaaaaacatgccacc--atgaa |
999 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | | ||||| |||| ||||| |
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|
| T |
2128059 |
gaacagatttctatgatactgcaatgtcttttgcttgttcattttttgcagagttccttattattgcttaggatacattatatacatgtcaccaaatgaa |
2127960 |
T |
|
| Q |
1000 |
t--gctaaatattgctagtattttac-taaatttca--taagtgctcgactttcataaaccatggagttaatatttatgtggctc |
1079 |
Q |
| |
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| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
2127959 |
ttgcctaaatattgctagtattttacttaaatttcaattaagtgctcgactttcataaaccat-gagtaaatatttatgtggctc |
2127876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 692 - 855
Target Start/End: Complemental strand, 2132507 - 2132344
Alignment:
| Q |
692 |
tattgtagatttgatgcagtcatacattttgctggactgaaagcagtaggtgaaagtgcgcagaaaccgttactctactacaacaacaacttgattggga |
791 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| |||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2132507 |
tattgtaggtttgatgcagttatacattttgctggaatgaaagcagtgggagaaagtgtgcagaaaccgttactctactacaacaacaacttgattggga |
2132408 |
T |
|
| Q |
792 |
caatcactctattggaagtcatggctgctcatggatgcaagaaggtaagttccttcttgttttt |
855 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2132407 |
caatcactcttttggaagtcatggctgctcatggatgcaagaaggtaagttccttcctgttttt |
2132344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 2133096 - 2133007
Alignment:
| Q |
174 |
atttgatgaaatttttgtggcacagcttgttttgtttagttgatagatccaaatattg-ttctaagctttctgtcatgtctaatctaact |
262 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| | | ||||| |||||||||||||| || | |||||||||||||||||||| ||||| |
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| T |
2133096 |
atttgatgtaatttttggggcacggcttgtttagaattgttgacagatccaaatattgcttttgagctttctgtcatgtctaatttaact |
2133007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 6e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 698 - 839
Target Start/End: Original strand, 42029743 - 42029884
Alignment:
| Q |
698 |
agatttgatgcagtcatacattttgctggactgaaagcagtaggtgaaagtgcgcagaaaccgttactctactacaacaacaacttgattgggacaatca |
797 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||| |||||||| |
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|
| T |
42029743 |
agatttgatgctgtcatacattttgctggactgaaagcagtaggtgaaagtgtgcagaaaccactgctctactatgacaacaacttgatcgggacaattg |
42029842 |
T |
|
| Q |
798 |
ctctattggaagtcatggctgctcatggatgcaagaaggtaa |
839 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
42029843 |
ttctatttgaagtcatggctgcccatggatgcaagaaggtaa |
42029884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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