View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4880-Insertion-2 (Length: 777)
Name: NF4880-Insertion-2
Description: NF4880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4880-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 6 - 424
Target Start/End: Complemental strand, 5474466 - 5474048
Alignment:
| Q |
6 |
caatatgtccttggtcttgacacttaaaacacttaaacatttttgtcggtatcatttggatgaatgatagttttaccttttgtttcaattgtcgtcttga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5474466 |
caatatgtccttggtcttgacacttaaaacacttaaacatttttgtcggtatcatttggatgaatgatagttttaccttttgtttcaattgtcgtcttga |
5474367 |
T |
|
| Q |
106 |
aagatgaagaaccctcctttcttttgtttgtttgtccttccaattttgagagttgagagcggtagttctcttctttgcatgactcttcctttttagttgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5474366 |
aagatgaagaaccctcctttcttttgtttgtttgtccttccaattttgagagttgagagcggtagttctcttctttgcatgactcttccttttgagttgt |
5474267 |
T |
|
| Q |
206 |
tgttctgccttgattgccttgatggattgatgcaccaattcttctatctccatgtaatgatgcaactccaacacatcacttatgtcatagtttagaccag |
305 |
Q |
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| T |
5474266 |
tgttctgccttgattgccttgatggattcatgcaccaattcttctatctccatgtaatgatgcaactccaccacatcacttatgtcatagtttagaccag |
5474167 |
T |
|
| Q |
306 |
gaacaaatttggccatggttgcttcattttcttcctccacgttgaccctttatttcttccattaagtagagaacaaagatgatgagtgtagattttttct |
405 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5474166 |
gaagaaatttggccatggttgcttcattttcttcctccacgttgaccctttatttcttccattaagtagagaacaaagatgatgagtgtagattttttct |
5474067 |
T |
|
| Q |
406 |
tgcgaatagaagtgttaag |
424 |
Q |
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| T |
5474066 |
tgcgaatagaagtgttaag |
5474048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 415 - 777
Target Start/End: Complemental strand, 5474015 - 5473659
Alignment:
| Q |
415 |
aagtgttaagtttgatatgagtaacatctaattaaaaggtgagtaccaaagaatgatttaaaaagaatgttgttagtgtttctctcnnnnnnnnaatagt |
514 |
Q |
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| T |
5474015 |
aagtggtaagtttcatatgagtaacatctaattaaaaggtgagtaccaaagaatgatttaaaaagaatgttgttagtgtttctct--tttttttaatagt |
5473918 |
T |
|
| Q |
515 |
agtgagttataacccatacaaataaaacgagagagggaatgggtgtcgtaggatcgaacacatacactcatattcatgctaactgtcgtgtagtaagtat |
614 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |
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| T |
5473917 |
agtgagatataacccatacaaataaaacaagagagggaatgggtgtcgtaggatcgaacacatacacccatactcatgctaactgtcgtgtagtaagcat |
5473818 |
T |
|
| Q |
615 |
gatttagaagtctcgcattgtttagaaaagtaaagattgataactttaaaatgagaagaccatacatatatctaatacattaaagttttagtttaaagtg |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
5473817 |
gatttagaagtctcgcattgtttagaaaagtaaagattgataactttaaaatgagaagac----catatatctaatacattaaggttttagtttaaagtg |
5473722 |
T |
|
| Q |
715 |
tagtgtccaactcacttgtaaaatttattgtctaatatgggtgatttgatctcctaaacttcc |
777 |
Q |
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|
| T |
5473721 |
tagtgtccaactcacttgtaaaatttattgtctaatatgggtgatttgatctcctagacttcc |
5473659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 14577417 - 14577481
Alignment:
| Q |
281 |
tcacttatgtcatagtttagaccaggaacaaatttggccatggttgcttcattttcttcctccac |
345 |
Q |
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||||| ||||||| ||||||||| ||| |||| ||||||||||||||||||| ||||||||||| |
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| T |
14577417 |
tcactaatgtcatgatttagaccatgaagaaatctggccatggttgcttcattgtcttcctccac |
14577481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 20742489 - 20742425
Alignment:
| Q |
281 |
tcacttatgtcatagtttagaccaggaacaaatttggccatggttgcttcattttcttcctccac |
345 |
Q |
| |
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||||| ||||||| ||||||||| ||| |||| | ||||||||||||||||| ||||||||||| |
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| T |
20742489 |
tcactaatgtcatgatttagaccatgaagaaatctagccatggttgcttcattgtcttcctccac |
20742425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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