View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4880-Insertion-3 (Length: 677)

Name: NF4880-Insertion-3
Description: NF4880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4880-Insertion-3
NF4880-Insertion-3
[»] chr6 (2 HSPs)
chr6 (169-660)||(2419801-2420276)
chr6 (8-97)||(2419643-2419731)
[»] chr4 (11 HSPs)
chr4 (8-97)||(9242758-9242846)
chr4 (204-281)||(9243041-9243117)
chr4 (168-220)||(31823039-31823091)
chr4 (568-636)||(52549592-52549660)
chr4 (535-610)||(34688796-34688871)
chr4 (168-215)||(9242923-9242970)
chr4 (228-282)||(9958249-9958303)
chr4 (168-219)||(12572561-12572610)
chr4 (168-219)||(33161823-33161872)
chr4 (172-220)||(42039045-42039093)
chr4 (168-219)||(53265986-53266035)
[»] scaffold0753 (2 HSPs)
scaffold0753 (8-97)||(4163-4251)
scaffold0753 (168-215)||(4035-4082)
[»] chr7 (5 HSPs)
chr7 (23-97)||(8261035-8261108)
chr7 (9-97)||(30362580-30362667)
chr7 (168-220)||(8260911-8260963)
chr7 (8-52)||(33803112-33803155)
chr7 (168-222)||(41219379-41219433)
[»] chr1 (12 HSPs)
chr1 (8-97)||(20447321-20447409)
chr1 (8-97)||(20533084-20533172)
chr1 (538-637)||(37138614-37138712)
chr1 (542-661)||(9645567-9645690)
chr1 (535-609)||(34452629-34452703)
chr1 (538-637)||(23410670-23410769)
chr1 (8-58)||(30858685-30858734)
chr1 (168-222)||(41871761-41871815)
chr1 (551-624)||(5190873-5190946)
chr1 (172-214)||(18843986-18844028)
chr1 (168-222)||(46178669-46178723)
chr1 (168-222)||(48566786-48566840)
[»] chr2 (4 HSPs)
chr2 (10-97)||(6903564-6903650)
chr2 (168-222)||(29908531-29908585)
chr2 (168-222)||(29132639-29132693)
chr2 (168-219)||(22495908-22495957)
[»] scaffold0217 (2 HSPs)
scaffold0217 (8-97)||(25754-25842)
scaffold0217 (168-220)||(25630-25682)
[»] chr8 (5 HSPs)
chr8 (168-222)||(34471597-34471651)
chr8 (568-637)||(3135516-3135585)
chr8 (227-284)||(30636131-30636188)
chr8 (224-284)||(5912315-5912375)
chr8 (500-575)||(34570203-34570280)
[»] chr3 (8 HSPs)
chr3 (168-220)||(39415376-39415428)
chr3 (203-283)||(36182756-36182836)
chr3 (168-222)||(25574855-25574909)
chr3 (172-225)||(6755723-6755776)
chr3 (8-97)||(47067979-47068067)
chr3 (168-219)||(2325446-2325495)
chr3 (168-219)||(42947559-42947608)
chr3 (168-219)||(44833619-44833668)
[»] chr5 (2 HSPs)
chr5 (168-222)||(6427312-6427366)
chr5 (168-220)||(10532823-10532875)
[»] scaffold0050 (1 HSPs)
scaffold0050 (557-601)||(46527-46571)


Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 169 - 660
Target Start/End: Original strand, 2419801 - 2420276
Alignment:
Q  169 gtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcatatgcattttaggcatggttgcagggcacaagtgttttttgcaggggg 268  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||| || | ||    
T  2419801 gtttgttcttcagttctgaccaccggccaacttgcgtgagttaactc--gcataggcattttaggcatggttgcagggcacaagtgttttttacatgagg 2419898  T
Q  269 aagagcaaaattcaaatggttacgaggatccataggagaaagtttgacttcatagcccctatttatacttatacccccaaacacctaatattcgcaagat 368  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||  |||||||||||||    
T  2419899 aagagcaaaattcaaatggttaagaggatccataggagaaagtttgacttcatagcctctatttatacctatacccccaaacaccggatattcgcaagat 2419998  T
Q  369 acctttaataaatcaagcctttaatacatcaagggcattttgggatatgggactatgtgtaattgtgtagttttgcagtcacactgaaataacgagagta 468  Q
    |||||||||||||||                ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2419999 acctttaataaatca----------------agggcattttgggatagtggactatgtgtaattgtgtagttttgtagtcacactgaaataacgagagta 2420082  T
Q  469 taatcaaattcttgggacatttttcatccccatttttaaaaccaaatacatgttatcgatgcacat--aaatttcagaagtcaaaagtatattaaaaaac 566  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  2420083 taatcaaattgttgggacatttttcatccccatttttaaaaccaaatacatgttatcgatacacatagaaatttcagaagtcaaaagtatattaaaaaac 2420182  T
Q  567 taaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaacaatgaaagatctacagtcttcaatttcatccatc 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  2420183 taaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaataatgaaagatctacagtcttcaattgcatccatc 2420276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 2419643 - 2419731
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  2419643 ggaggagataatgtgaggaaaagaggaagttt-gtgagggtatttataggtaggaatgataaactagtttgtatctaccataaatgtggt 2419731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 9242758 - 9242846
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  9242758 ggaggagataatgtgaggaaaagaggaagttt-gtgagggtatttataggtaggaatgataacctagtttgtacctaccataaatgtggt 9242846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 9243041 - 9243117
Alignment:
Q  204 gtgagttaactcacgcatatgcattttaggcatggttgcagggcacaagtgttttttgcagggggaagagcaaaattc 281  Q
    |||| ||||||||||||   |||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||    
T  9243041 gtgacttaactcacgcacgggcattttaggcatggttgcagggcgcgagtgttttgtgca-ggggaagagcaaaattc 9243117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 31823091 - 31823039
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgca 220  Q
    |||||||||||||||||| | ||||||||||| | ||||||||||||||||||    
T  31823091 cgtttgttcttcagttctgaccaccggccaacgtgcgtgagttaactcacgca 31823039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 636
Target Start/End: Complemental strand, 52549660 - 52549592
Alignment:
Q  568 aaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaacaatgaaagat 636  Q
    ||||||||||| |||| || |||||||||||||||| ||||||||||||| | ||||  ||||||||||    
T  52549660 aaactcttaatcctaacaatcaaactaaattctttcacatatgaccaatggtcaagagtaatgaaagat 52549592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 610
Target Start/End: Complemental strand, 34688871 - 34688796
Alignment:
Q  535 aaatttcagaagtcaaaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcatatg 610  Q
    |||||| ||||  |||||||  ||||| |||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  34688871 aaatttaagaaaccaaaagttcattaacaaaccaaactcttaatcctaatacccaaactaaattctttcacatatg 34688796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 9242923 - 9242970
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactc 215  Q
    |||||||||||||||||| |  |||||||||||| |||||||||||||    
T  9242923 cgtttgttcttcagttctgactaccggccaacttgcgtgagttaactc 9242970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 9958249 - 9958303
Alignment:
Q  228 tttaggcatggttgcagggcacaagtgttttttgcagggggaagagcaaaattca 282  Q
    ||||||||||| |||||||| | |||||||| ||| ||||| |||||||||||||    
T  9958249 tttaggcatggctgcagggcgcgagtgttttgtgctggggggagagcaaaattca 9958303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 12572610 - 12572561
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgc 219  Q
    ||||||||||||||||||   ||||||||||||  |||||||||||||||||    
T  12572610 cgtttgttcttcagttctg--caccggccaactggcgtgagttaactcacgc 12572561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 33161872 - 33161823
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgc 219  Q
    ||||||||||||||||||   ||||||||||||  |||||||||||||||||    
T  33161872 cgtttgttcttcagttctg--caccggccaactagcgtgagttaactcacgc 33161823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 42039093 - 42039045
Alignment:
Q  172 tgttcttcagttctaatcaccggccaactttcgtgagttaactcacgca 220  Q
    |||||||||||||| | ||||||||||| | ||||||||||||| ||||    
T  42039093 tgttcttcagttctgaccaccggccaacgtgcgtgagttaactcgcgca 42039045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 53266035 - 53265986
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgc 219  Q
    ||||||||||||||||||   ||||||||||||  |||||||||||||||||    
T  53266035 cgtttgttcttcagttctg--caccggccaactagcgtgagttaactcacgc 53265986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 4251 - 4163
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  4251 ggaggagataatgtgaggaaaagaggaagttt-gtgagggtatttatacgtaggaatgataacctagtttgtacctaccataaatgtggt 4163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 4082 - 4035
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactc 215  Q
    |||||||||||||||||| | |||||| |||||| |||||||||||||    
T  4082 cgtttgttcttcagttctgaccaccggtcaacttgcgtgagttaactc 4035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 8261108 - 8261035
Alignment:
Q  23 aggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8261108 aggaaaagaggaagttt-gtgagggtatttataggtaggaatgataacctagtttgtatctaccataaatgtggt 8261035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 30362580 - 30362667
Alignment:
Q  9 gaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    ||||||||||||| ||||| | ||||||| | |||||||||||| ||||||| ||||| ||||||| ||||||||| ||| ||||||||    
T  30362580 gaggagataatgtgaggaatataggaagtat-gtgagggtatttataggtagaaatgagaacctaggttgtatctaacattaatgtggt 30362667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 8260963 - 8260911
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgca 220  Q
    ||||||||| |||||||| | ||||||||||||| ||||||||||||| ||||    
T  8260963 cgtttgttcatcagttctgaccaccggccaacttgcgtgagttaactcgcgca 8260911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 33803155 - 33803112
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtattt 52  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  33803155 ggaggagataatgtgaggaaaagaggaag-tttgtgagggtattt 33803112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 41219379 - 41219433
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||||||| | |||| |||||| | ||||||||||||| ||||||    
T  41219379 cgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcata 41219433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 20447409 - 20447321
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||||||| | ||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||||||||||    
T  20447409 ggaggagataatgtgacgaaaagaggaagttt-gtgagggtatttatagatagaaatgacaacctagtttgtatctaacataaatgtggt 20447321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 20533172 - 20533084
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||||||| | ||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||||||||||    
T  20533172 ggaggagataatgtgacgaaaagaggaagttt-gtgagggtatttatagatagaaatgacaacctagtttgtatctaacataaatgtggt 20533084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 637
Target Start/End: Original strand, 37138614 - 37138712
Alignment:
Q  538 tttcagaagtcaaaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaacaatgaaagatc 637  Q
    |||||||||  ||||||| ||||| |||| ||||||| ||| ||| || |||||||||||||| || ||||||| ||||||| ||||| |||||||||||    
T  37138614 tttcagaagcaaaaagtaaattaacaaaccaaactctcaatccta-tagccaaactaaattctctcacatatgatcaatgatcaagaataatgaaagatc 37138712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 661
Target Start/End: Original strand, 9645567 - 9645690
Alignment:
Q  542 agaagtcaaaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcata----tgaccaatgatgaagaacaatgaaagatc 637  Q
    ||||||||||||||  |||| |||| ||||| ||||| |||| ||||||| ||||||||| | ||||    || | |||||| ||||| |||||||||||    
T  9645567 agaagtcaaaagtacgttaacaaaccaaacttttaatcctaacaaccaaattaaattcttccacatacatatggctaatgatcaagaataatgaaagatc 9645666  T
Q  638 tacagtcttcaatttcatccatcc 661  Q
     || |||||||||| |||||||||    
T  9645667 aacggtcttcaattacatccatcc 9645690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 609
Target Start/End: Original strand, 34452629 - 34452703
Alignment:
Q  535 aaatttcagaagtcaaaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcatat 609  Q
    |||||| |||||  ||||||| ||||| ||||||||||||||||||||  || |||||||||||||||| |||||    
T  34452629 aaatttaagaaggtaaaagtacattaacaaactaaactcttaattctatcaagcaaactaaattctttcccatat 34452703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 637
Target Start/End: Complemental strand, 23410769 - 23410670
Alignment:
Q  538 tttcagaagtcaaaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaacaatgaaagatc 637  Q
    ||||||||| |||||||| ||||  || | ||||||||||| |||| ||||||||| ||||| | | ||||||||||||| | ||||| ||| |||||||    
T  23410769 tttcagaaggcaaaagtacattagcaacccaaactcttaatcctaacaaccaaactgaattcatccacatatgaccaatggtcaagaataattaaagatc 23410670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 30858734 - 30858685
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggt 58  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  30858734 ggaggagataatgtgaggaaaagaggaag-tttgtgagggtatttataggt 30858685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 41871815 - 41871761
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||||||| | ||||||||||| | ||||||||||||| ||||||    
T  41871815 cgtttgttcttcagttcttaccaccggccaacgtgcgtgagttaactcgcgcata 41871761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 624
Target Start/End: Complemental strand, 5190946 - 5190873
Alignment:
Q  551 aagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaaga 624  Q
    ||||||||||| ||||||||||||||||  ||| || |||| |||||| || | ||||||||||||||| ||||    
T  5190946 aagtatattaacaaactaaactcttaatattaacaatcaaattaaattgttccacatatgaccaatgatcaaga 5190873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 18843986 - 18844028
Alignment:
Q  172 tgttcttcagttctaatcaccggccaactttcgtgagttaact 214  Q
    |||||||||||||| ||||||||||||| | ||||||||||||    
T  18843986 tgttcttcagttctgatcaccggccaacgtgcgtgagttaact 18844028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 46178723 - 46178669
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||||||| | |||||| |||| | ||||||||||||| ||||||    
T  46178723 cgtttgttcttcagttctgaccaccggtcaacatgcgtgagttaactcgcgcata 46178669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 48566840 - 48566786
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||||||| | |||| |||||| | ||||||||||||| ||||||    
T  48566840 cgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcata 48566786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 6903564 - 6903650
Alignment:
Q  10 aggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||||| ||||||||||| ||||| ||||| |||||| ||||||| ||||||||||| ||||||||||| ||||||| ||||    
T  6903564 aggagataatgtgaggaaaagagggagttt-gtgagagtatttataggtagaaatgataacctggtttgtatctatcataaatatggt 6903650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 29908585 - 29908531
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||||||||| ||||||||||| | | ||||||||||| ||||||    
T  29908585 cgtttgttcttcagttctaaccaccggccaacgtgcatgagttaactcgcgcata 29908531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 29132639 - 29132693
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||| ||| | ||||||||||| | ||||||||||||| ||||||    
T  29132639 cgtttgttcttcagctctgaccaccggccaacgtgcgtgagttaactcgcgcata 29132693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 22495908 - 22495957
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgc 219  Q
    |||||||||||||||||||  ||||||||||||  || ||||||||||||||    
T  22495908 cgtttgttcttcagttcta--caccggccaactggcgcgagttaactcacgc 22495957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 25842 - 25754
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||||| | ||||||||||||| ||| |||||||||||| ||||||| ||||| ||| ||||||||||||| |||| |||||||    
T  25842 ggaggagataatatgaggaaaagaggaaattt-gtgagggtatttataggtagaaatgacaacttagtttgtatctaacatagatgtggt 25754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 25682 - 25630
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgca 220  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||| ||||    
T  25682 cgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgcgca 25630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 34471597 - 34471651
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||    
T  34471597 cgtttgttcttcagttctaaccaccggccaacgtgcgtgagttaactcgcgcata 34471651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 637
Target Start/End: Original strand, 3135516 - 3135585
Alignment:
Q  568 aaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaacaatgaaagatc 637  Q
    |||||||||||||||| ||||||||||||||||||| |||||||  |||||| || || || ||||||||    
T  3135516 aaactcttaattctaacaaccaaactaaattctttcacatatgataaatgatcaaaaataaggaaagatc 3135585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 30636188 - 30636131
Alignment:
Q  227 ttttaggcatggttgcagggcacaagtgttttttgcagggggaagagcaaaattcaaa 284  Q
    |||||||||||| |||| || || |||||||| |||||||| ||||||||||||||||    
T  30636188 ttttaggcatggctgcatggtacgagtgttttgtgcaggggaaagagcaaaattcaaa 30636131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 5912375 - 5912315
Alignment:
Q  224 gcattttaggcatggttgcagggcacaagtgttttttgcagggggaagagcaaaattcaaa 284  Q
    ||||||||||||||| ||| |||  |||||||||| ||| ||| |||||||||||||||||    
T  5912375 gcattttaggcatggctgccgggtgcaagtgttttgtgctgggtgaagagcaaaattcaaa 5912315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 575
Target Start/End: Original strand, 34570203 - 34570280
Alignment:
Q  500 atttttaaaaccaaatacatgttatcgatgcacat--aaatttcagaagtcaaaagtatattaaaaaactaaactctt 575  Q
    ||||| ||| |||||||||||||||| || |||||  |||||||||||  |||||||| ||||| |||| ||||||||    
T  34570203 attttgaaagccaaatacatgttatcaatacacataaaaatttcagaaagcaaaagtaaattaacaaaccaaactctt 34570280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 39415428 - 39415376
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgca 220  Q
    |||||||||||||||||||| || |||||||| | ||||||||||||||||||    
T  39415428 cgtttgttcttcagttctaaccatcggccaacgtgcgtgagttaactcacgca 39415376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 36182836 - 36182756
Alignment:
Q  203 cgtgagttaactcacgcatatgcattttaggcatggttgcagggcacaagtgttttttgcagggggaagagcaaaattcaa 283  Q
    ||||| ||||||||||||    |||||| | ||||| | |||||| | |||||||| ||||||||||||||||||||||||    
T  36182836 cgtgacttaactcacgcagggtcattttggacatggctacagggcgcgagtgttttgtgcagggggaagagcaaaattcaa 36182756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 25574909 - 25574855
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||||||| | ||||| ||||| | ||||||||||||| ||||||    
T  25574909 cgtttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcgcata 25574855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 6755723 - 6755776
Alignment:
Q  172 tgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcatatgc 225  Q
    ||||||| || ||||| ||||||||||||| ||||||||||||| |||| ||||    
T  6755723 tgttcttgagctctaaccaccggccaacttgcgtgagttaactcgcgcacatgc 6755776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 47067979 - 47068067
Alignment:
Q  8 ggaggagataatgtaaggaaaagaggaagttttgtgagggtatttgtaggtaggaatgataacctagtttgtatctaccataaatgtggt 97  Q
    |||||||||| ||| ||||| | ||||||| | |||||||||||| ||||||| ||||  ||||||| |||||||||   ||||||||||    
T  47067979 ggaggagatagtgtgaggaatataggaagtat-gtgagggtatttataggtagaaatgggaacctaggttgtatctaaattaaatgtggt 47068067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 2325446 - 2325495
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgc 219  Q
    ||||||||||||||||||   ||||||||||||  |||||||||||||||||    
T  2325446 cgtttgttcttcagttctg--caccggccaactagcgtgagttaactcacgc 2325495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 42947608 - 42947559
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgc 219  Q
    ||||||||||||||||||   ||||||||||||  |||||||||||||||||    
T  42947608 cgtttgttcttcagttctg--caccggccaactagcgtgagttaactcacgc 42947559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 44833668 - 44833619
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgc 219  Q
    ||||||||||||||||||   ||||||||||||  |||||||||||||||||    
T  44833668 cgtttgttcttcagttctg--caccggccaactagcgtgagttaactcacgc 44833619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 6427366 - 6427312
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgcata 222  Q
    |||||||||||||| ||||||||||||||||  | ||||||||||||| ||||||    
T  6427366 cgtttgttcttcagctctaatcaccggccaaggtgcgtgagttaactcgcgcata 6427312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 10532875 - 10532823
Alignment:
Q  168 cgtttgttcttcagttctaatcaccggccaactttcgtgagttaactcacgca 220  Q
    |||||||||||||| ||| | ||||||||||||| ||||||||||||| ||||    
T  10532875 cgtttgttcttcagctctgaccaccggccaacttgcgtgagttaactcgcgca 10532823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 46527 - 46571
Alignment:
Q  557 attaaaaaactaaactcttaattctaataaccaaactaaattctt 601  Q
    ||||| |||||||||||||||| |||| ||| |||||||||||||    
T  46527 attaacaaactaaactcttaatcctaacaacaaaactaaattctt 46571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University