View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4880-Insertion-4 (Length: 575)
Name: NF4880-Insertion-4
Description: NF4880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4880-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 4230516 - 4230445
Alignment:
| Q |
8 |
cacatcacactaacaaagtacaataaatcagagaagagcaaaaactaattgataaaacgcatacaaagaatg |
79 |
Q |
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| T |
4230516 |
cacatcacactaacaaagtacaataaattagagaagagcaaaaactaattgataaaacgcatacaaacaatg |
4230445 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 4230424 - 4230387
Alignment:
| Q |
80 |
taaatcaaaagctaaatacacatgttttgctttcaacc |
117 |
Q |
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| T |
4230424 |
taaatcaaaagctaaatgcacatgtttcgctttcaacc |
4230387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 3534708 - 3534603
Alignment:
| Q |
408 |
agggacggagatcatcaggaggcgacatgtggagcaagaggccaacatct-aacttgctcctagcttgacaaaataatatgcacattggtttccttcgcg |
506 |
Q |
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||||| |||||||||| ||||| || |||||| ||||| ||||||||| |||||||| ||| |||| |||||||||||| |||||||| ||||| || |
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| T |
3534708 |
agggaaggagatcatccggaggggatgggtggagtaagagaccaacatctgaacttgcttctaacttggcaaaataatatgtgcattggttaccttcacg |
3534609 |
T |
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| Q |
507 |
aagagt |
512 |
Q |
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|||||| |
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| T |
3534608 |
aagagt |
3534603 |
T |
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