View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4880_high_3 (Length: 311)
Name: NF4880_high_3
Description: NF4880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4880_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 33432792 - 33432568
Alignment:
| Q |
12 |
atgaaaatgaagtaagagaagaggaatgtgagaaaatggaagagtgtgttgtgaagga----gcacagaaagaggttagctatgatgttgtacttataga |
107 |
Q |
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| T |
33432792 |
atgaaaatgaagtaagagaagaggaatgtgagaaaatgaaggagtgtgttgtgaaagaaagagcacagaaagatgttagctatgatgttgtacttatagc |
33432693 |
T |
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| Q |
108 |
gaaatgagtgagaaaggtggaagaaggtggggtccacgtttgtatttttatacgtaaataaatgaaatccgggagggagatgtgggctccgttattaact |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||| || |||||||||||| |
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| T |
33432692 |
gaaatg-gtgagaaaggtggaagaaggtggggtccacgtttgtatttttatacg----taaacgaaattc----gggaactg-----cccgttattaact |
33432607 |
T |
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| Q |
208 |
gctttttctgccgtttacattcttgaatttgtatcaaac |
246 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
33432606 |
gctttttctgccgtttacattcttcaatttgtatcaaac |
33432568 |
T |
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