View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4881-Insertion-1 (Length: 679)
Name: NF4881-Insertion-1
Description: NF4881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4881-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 31697344 - 31696774
Alignment:
| Q |
8 |
ctaagtgccttaagctcataggttccttagaagcaaacttcaaagaaggataagaagaaagaaaaatctgtcattaaggaaattaactcaaaaactatga |
107 |
Q |
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| T |
31697344 |
ctaagtgccttaagctcataggttccttagaagtaaacttcaaagaaggataagaagaaagaaaaatctgtcattaaggaaattaactcaaaaactatga |
31697245 |
T |
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| Q |
108 |
atgcctctgccattaagagtgcacaagtgcttgaagatgataaaggaatataagaaatcaacgtagaagccactcatgttaagatagggagtttaaaaga |
207 |
Q |
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| T |
31697244 |
atgcctctgccattaagagtgcacaagtgcttgaagatgataaaggaagataagaaatcaacatagaagccactcatgttaagatagggagtttaaaaga |
31697145 |
T |
|
| Q |
208 |
atgaagatgataaagaaagtttgagcgaaagttaagnnnnnnntcatgaaagttattatgacacaacatcgtcttcgaagaaagaataaggagataacga |
307 |
Q |
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| T |
31697144 |
atgaagatgataaagaaagtttgagcgaaagttaagaaaaaaatcatgaaagttattatgacgcaacatcgtcttcgaagaaagaataaggagataacga |
31697045 |
T |
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| Q |
308 |
tgaaaatcatgagatttcgtctaaataatatccagaaccatccaaatttaactcaaatatgcttgatggcttaacaattcctttgaatgtggttgacaac |
407 |
Q |
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| T |
31697044 |
tgaaaatcatgagatttcgtctaaataatatccagaaccatccaaatttaagtcaaatatgcttgatggcttaacaattcctttgaatgtggttgacaac |
31696945 |
T |
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| Q |
408 |
ctttttgatgtgcagtttgatgttgaagaatttcataacaaagtatccccatccttggctcttagcttctttgtttcctccttggctctcagcttcttga |
507 |
Q |
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| T |
31696944 |
ctttttgatgtgcagtttgatgttgaagaatttcataacaaagtatccccattcttggctcttagcttctttgtttcctccttggctctcagcttcttga |
31696845 |
T |
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| Q |
508 |
attcgatcatgatttctaatcttgtcgaaaatagaactgcatttgggaaaaacgtcgtcttttgattaaaa |
578 |
Q |
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| T |
31696844 |
attcgatcgtgatttctaatcttgtcgaaaatagaactgcatttgggcaaaacgtcgtcttttgattaaaa |
31696774 |
T |
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