View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4881-Insertion-2 (Length: 320)
Name: NF4881-Insertion-2
Description: NF4881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4881-Insertion-2 |
 | |
|
| [»] scaffold0125 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0125 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 19082 - 19341
Alignment:
| Q |
6 |
cacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaatt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||| |
|
|
| T |
19082 |
cacaatattcccaatcatttgctccaagcgctccatcttctgttttagcgtttcttgttcaaaaattttcttttcaagttcagcggttaatgcttcaatt |
19181 |
T |
|
| Q |
106 |
ttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagatccta |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19182 |
ttagcctccatagcagcaactttttccgaagaagctacatcggttgaaattgaaggcgatggtctcaaagattctttgacaacaacaacttgagatccta |
19281 |
T |
|
| Q |
206 |
atccaaatatacaccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
265 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19282 |
atccaaatatgcgccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
19341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 19838 - 19882
Alignment:
| Q |
276 |
ataagggttacttcaaagaaaacaggccttcatacttcagcaatg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19838 |
ataagggttacttcaaagaaaacaggccttcatacttcagcaatg |
19882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 13408033 - 13407774
Alignment:
| Q |
6 |
cacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaatt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13408033 |
cacaatattcccaatcatttgctccaagcgctccatcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagcggttaatgcttcaatc |
13407934 |
T |
|
| Q |
106 |
ttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagatccta |
205 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13407933 |
ttatcctccatagcagcaactttttcagaagaaggtacatcggtagaaattgagcgtgatggtctcaaagattctttgacaacaacagcttgagatccta |
13407834 |
T |
|
| Q |
206 |
atccaaatatacaccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
265 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13407833 |
atccaaatatgcgccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
13407774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 13532363 - 13532622
Alignment:
| Q |
6 |
cacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaatt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13532363 |
cacaatattcccaatcatttgctccaagcgctccatcttttgttttagtgtttcttgttcaagatttttcttttcaagttcagcggttaatgcttcaatc |
13532462 |
T |
|
| Q |
106 |
ttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagatccta |
205 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13532463 |
ttagcctccatagcagtaactttttcagaagaaggtacatcggtagaaattgagcgtgacggtctcaaagattctttgacaacagcagcttgagatccta |
13532562 |
T |
|
| Q |
206 |
atccaaatatacaccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
265 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13532563 |
atccaaatatgcgccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
13532622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 7471637 - 7471746
Alignment:
| Q |
6 |
cacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaatt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
7471637 |
cacaatattcccaatcatttgctccaagcgctccatcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagcggttaatgcttcaatc |
7471736 |
T |
|
| Q |
106 |
ttagcctcca |
115 |
Q |
| |
|
|||||||||| |
|
|
| T |
7471737 |
ttagcctcca |
7471746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 7471772 - 7471818
Alignment:
| Q |
219 |
ccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7471772 |
ccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
7471818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 12815505 - 12815764
Alignment:
| Q |
6 |
cacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaatt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
12815505 |
cacaatattcccaatcatttgctccaagcgctccatcttttgttttagcgtttcttgttcaagatttttcttttcaagttcagcggttaatgcttcaatc |
12815604 |
T |
|
| Q |
106 |
ttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagatccta |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12815605 |
ttagcctccatagcagcaacttttttagaagaaggtacatcagtagaaattgagcgtgacggtctcaaagattctttgacaacagcagcttgagatccta |
12815704 |
T |
|
| Q |
206 |
atccaaatatacaccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
265 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12815705 |
atccaaatatgcgccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
12815764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 6 - 268
Target Start/End: Original strand, 13496577 - 13496839
Alignment:
| Q |
6 |
cacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
13496577 |
cacaatattcccaataatttgcttcaagcgctccatcttctgtcttagtgtttcttgttcaagatttttctttttaagttcaacggttaatgcttcaatt |
13496676 |
T |
|
| Q |
106 |
ttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagatccta |
205 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
13496677 |
ttagcccccataacagcaactttttctgaagaaactacatcggtagaaattgaaggcgatggtctcaaagattctttgaaaacaacaacttgagatccta |
13496776 |
T |
|
| Q |
206 |
atccaaatatacaccccttcttgttaatgcctccaacaatttccatataaatatcattgtcaa |
268 |
Q |
| |
|
|| || ||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13496777 |
atttaagtatgttctccttcttgttaatgcctccaacaatttccatataaataccattgtcaa |
13496839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 10300125 - 10300384
Alignment:
| Q |
6 |
cacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaatt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10300125 |
cacaatattcccaatcatttgctccaagcgctccatcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagcggttaatgcttcaatc |
10300224 |
T |
|
| Q |
106 |
ttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagatccta |
205 |
Q |
| |
|
||| |||||||||||| ||||| || ||||||| |||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10300225 |
ttaacctccatagcagaaacttattaagaagaaggtacatcggtagaaattgagcgtgatggtctcaacgattctttgacaacaacagcttgagatccta |
10300324 |
T |
|
| Q |
206 |
atccaaatatacaccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
265 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10300325 |
atccaaatatgagccccttcttgttaatgcctccaacaatttccatataaatatcattgt |
10300384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 27830445 - 27830183
Alignment:
| Q |
5 |
acacaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcag---tgcttaatgcttc |
101 |
Q |
| |
|
|||||| || ||||| |||||| | |||| ||||| |||||||||||| | ||||||||||| ||||||||||||||||||| | |||| ||||| |
|
|
| T |
27830445 |
acacaaaattcccaaacatttggttcaagtgctccatcttctgttttatcatttcttgttcacaatttttcttttcaagttcatccattattaaggcttc |
27830346 |
T |
|
| Q |
102 |
aattttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagat |
201 |
Q |
| |
|
| | ||||||||||||| ||||||||||| | ||||| || | ||||||||| |||| | |||| || |||||||||| ||||||||| |||||||| |
|
|
| T |
27830345 |
attcttagcctccataggagcaactttttccaaagaaactgc----gtagaaattaaaggtggtggtctcgaagattctttaacaacaacaccttgagat |
27830250 |
T |
|
| Q |
202 |
cctaatccaaatatacaccccttcttgttaatgcctccaacaatttccatataaatatcattgtcaa |
268 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
27830249 |
tctaatccaaatatgtcccccttcttgttaatgcctccgacaatttccatgtaaataccattgtcaa |
27830183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 17031410 - 17031259
Alignment:
| Q |
15 |
cccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctcc |
114 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||||||| |||||||||| |||||||||||||| ||||| || ||||||||||||| |||| ||| |
|
|
| T |
17031410 |
cccaaacatttgctccaagcgctcaatcttttgttttagtgtttcttgttaaagatttttctttttaagtttagcaattaatgcttcaatcttagtgtcc |
17031311 |
T |
|
| Q |
115 |
atagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatg |
166 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
17031310 |
atagcagcaactttttctgaagaaactacatcggtagaaattgaaggcgatg |
17031259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 17561846 - 17561695
Alignment:
| Q |
15 |
cccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctcc |
114 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||||||| |||||||||| |||||||||||||| ||||| || ||||||||||||| |||| ||| |
|
|
| T |
17561846 |
cccaaacatttgctccaagcgctcaatcttttgttttagtgtttcttgttaaagatttttctttttaagtttagcaattaatgcttcaatcttagtgtcc |
17561747 |
T |
|
| Q |
115 |
atagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatg |
166 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
17561746 |
atagcagcaactttttctgaagaaactacatcggtagaaattgaaggcgatg |
17561695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 17031189 - 17031230
Alignment:
| Q |
21 |
catttgctccaagcgctccgtcttctgttttagcgtttcttg |
62 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17031189 |
catttgccccaagcgctccatcttttgttttagcgtttcttg |
17031230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 17561625 - 17561666
Alignment:
| Q |
21 |
catttgctccaagcgctccgtcttctgttttagcgtttcttg |
62 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17561625 |
catttgccccaagcgctccatcttttgttttagcgtttcttg |
17561666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 3331007 - 3330833
Alignment:
| Q |
22 |
atttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcag |
121 |
Q |
| |
|
||||||||||||| | || |||||| ||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
3331007 |
atttgctccaagcac-ccatcttctcttttattgtttcttgttcacgatttttcttttcaagttcagcggttaatgcttcaatcttagcctccatagcaa |
3330909 |
T |
|
| Q |
122 |
caacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagattctttgacaacaacagcttgagatcctaatccaaa |
212 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3330908 |
caact---------------acatcagtagaaattgaaggcaatggtctcaaagattctttgacaacaacagcttgagatcctaatccaaa |
3330833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 21844209 - 21844152
Alignment:
| Q |
31 |
aagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcag |
88 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21844209 |
aagcgctccatcttctgttttagcgtttcttgttcaagatttttcttttcaagttcag |
21844152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 21844019 - 21843985
Alignment:
| Q |
276 |
ataagggttacttcaaagaaaacaggccttcatac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
21844019 |
ataagggttacttcaaagaaaacaggccttcatac |
21843985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 38962500 - 38962595
Alignment:
| Q |
34 |
cgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaactttt |
129 |
Q |
| |
|
|||||| |||||||||||| | || || |||| |||||||||| |||| |||| ||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
38962500 |
cgctccatcttctgttttatcattatttattcaggatttttcttctcaacttcaacagttaatgctttaatcttagcctccataccagcaactttt |
38962595 |
T |
|
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