View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4882-Insertion-2 (Length: 914)
Name: NF4882-Insertion-2
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4882-Insertion-2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 595 - 914
Target Start/End: Original strand, 803734 - 804054
Alignment:
| Q |
595 |
ttcaatgttattctgttattttgtaacaatatctatctacat--taccaatgtaatgttaagatagttccaatgaatagaaaaattaaaatacaaattca |
692 |
Q |
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| T |
803734 |
ttcaatgtt-ttctgttattttgtaacaatatctatctatatattaccaatgtaatgttaagatagttccaatgaatagaaaaattaaaatacaaattca |
803832 |
T |
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| Q |
693 |
gcaacctagtgaacatatatgagactatgacatcattattagagattattctctatcctcgctcgcccccgggatagcattttctggaagttaccnnnnn |
792 |
Q |
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| T |
803833 |
gcaacctagtgaacatatatgagactatgacatcattattagagattattctctatcctcgctcgcccccgggatagcattttctggaagttaccttttt |
803932 |
T |
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| Q |
793 |
nnagtggtaagtaaagtataccatattccttctactgccacgttttcctctcgaatctagatacttctgcacagggctatttgatattcaaagaatcaaa |
892 |
Q |
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| T |
803933 |
ttagtggtaagtaaagtataccatattccttctactgccacgttttcctctcgaatctagatacttctgcacagggctatttgatattcaaagaatcaaa |
804032 |
T |
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| Q |
893 |
atcattcatattttatctatag |
914 |
Q |
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| T |
804033 |
atcattcatattttatctatag |
804054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 152 - 553
Target Start/End: Original strand, 803349 - 803722
Alignment:
| Q |
152 |
gcatagcaaagtctttaccatttgacaaagtcaagttnnnnnnncatatgagagatctactacgtcattaggaactgagattaattctcaattggagagt |
251 |
Q |
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| T |
803349 |
gcatagcatagtctttaccatttgacaaagtcaagttaaaaaaacatatgagagatctactacgtcattaggaactgagatt----ctcaattggagagt |
803444 |
T |
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| Q |
252 |
gggatatctaaaattaatttcagtttatatattgtgtctattcaaataagtgtcctcggattaaggtgtctgctcacccaaaacttgttgaatttggttc |
351 |
Q |
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| T |
803445 |
gggatatctaaaattaatttcagtttat----tgtgtccattcaaataagtgtcctcggattaaggtgtctgctcacccaaaacttgttgaatttggttc |
803540 |
T |
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| Q |
352 |
gttactgttatttgctattacaagttagtattacagtatatatatgagcatcttccatgttattttttatgaacctactacattggatatcatacactac |
451 |
Q |
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| T |
803541 |
gttactgttatttgctattacaagttagtattacag----tatatgagcatcttccatgttattttttatgaacctactacattggat------------ |
803624 |
T |
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| Q |
452 |
tatcaaatagtttctcaatgctgctacttcatacttattaaactcatactcannnnnnnactctaaaagtaaaaaattataaaactctaacaaccataat |
551 |
Q |
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| T |
803625 |
----aaatagtttctcaatgctgctacatcatacttattaaactcatactcatttttttactctaaaagtaaaaaattatacaactctaacaaccataat |
803720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 803166 - 803304
Alignment:
| Q |
8 |
aataattgtccaaaatgactagtctagcttgaatttgttgcaaattgtaatgcacggcatagaaaagtgtacaaaagaagcagtcaaatttgtccactac |
107 |
Q |
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| T |
803166 |
aataatggtccaaaatgactagtctagcttgaatttgttgcaaattgtaatgcacggcatagaaaagtttacaaaagaagcagtcaaatttgtccactac |
803265 |
T |
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| Q |
108 |
tttgattcgtccagtccaggtagcaaaggatgaatggtatgccg |
151 |
Q |
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| T |
803266 |
tttgattc-----gtccaggtagcaaaggatgaatggtatgccg |
803304 |
T |
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