View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4882-Insertion-3 (Length: 859)
Name: NF4882-Insertion-3
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4882-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 309 - 624
Target Start/End: Complemental strand, 4284670 - 4284361
Alignment:
| Q |
309 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
408 |
Q |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
|
| Q |
409 |
tttcgcagttcacattttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttccaaacctaaannnnnnnct |
508 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
4284575 |
tttcgcagttcacattttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttcaaaacctaaa-ttttttct |
4284477 |
T |
|
| Q |
509 |
cagtaacaatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctag |
608 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4284476 |
cagtaataatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctag |
4284377 |
T |
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| Q |
609 |
aagacaccaatggcgg |
624 |
Q |
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| T |
4284376 |
aagacaccaatggcgg |
4284361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 4286460 - 4286173
Alignment:
| Q |
10 |
aacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaacttgtagaacatggtactgttatgcccagtgaaaattgaac |
109 |
Q |
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| T |
4286460 |
aacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaactagtagaacatggtactgttatgcccggtgaaaattgaac |
4286361 |
T |
|
| Q |
110 |
agacctctacttttatgtgannnnnnnnngctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttact |
209 |
Q |
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| T |
4286360 |
agacctctacgtttatgtgattcttttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttact |
4286261 |
T |
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| Q |
210 |
taattatcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgtatattattctcagacgaat |
297 |
Q |
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| T |
4286260 |
taattatcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgtatatcattctcagatgaat |
4286173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 737 - 859
Target Start/End: Complemental strand, 4284248 - 4284126
Alignment:
| Q |
737 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacggaaatcactgccgatctccctgttaaccaccgtcactctc |
836 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
4284248 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacagaaatcactgccgatctccccgttaaccaccgtcactctc |
4284149 |
T |
|
| Q |
837 |
tctattcctccggccacgtttgt |
859 |
Q |
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||||||||||||||||||||||| |
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| T |
4284148 |
tctattcctccggccacgtttgt |
4284126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
216 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
278 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| | ||||||||| ||||||||| |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 737 - 778
Target Start/End: Complemental strand, 8682321 - 8682280
Alignment:
| Q |
737 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaa |
778 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8682321 |
aaatccaaaatcaatttccatctcaaaaccctaaaccaccaa |
8682280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 776
Target Start/End: Original strand, 6348737 - 6348776
Alignment:
| Q |
737 |
aaatccaaaatcaatttccatctcaaaaccctaaaccccc |
776 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| |
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| T |
6348737 |
aaatacaaaatcaatttgcatctcaaaaccctaaaccccc |
6348776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 620
Target Start/End: Complemental strand, 23429478 - 23429422
Alignment:
| Q |
564 |
caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg |
620 |
Q |
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|||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |
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| T |
23429478 |
caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg |
23429422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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