View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4882-Insertion-4 (Length: 749)

Name: NF4882-Insertion-4
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4882-Insertion-4
NF4882-Insertion-4
[»] chr3 (15 HSPs)
chr3 (7-339)||(51587939-51588264)
chr3 (619-697)||(7231899-7231976)
chr3 (488-535)||(51587890-51587938)
chr3 (619-692)||(37215129-37215201)
chr3 (654-703)||(51410939-51410988)
chr3 (619-703)||(37302961-37303044)
chr3 (620-697)||(37303485-37303561)
chr3 (619-704)||(42475863-42475947)
chr3 (620-703)||(28300533-28300615)
chr3 (619-697)||(20380782-20380859)
chr3 (619-697)||(44695112-44695190)
chr3 (657-695)||(5244235-5244273)
chr3 (663-697)||(7293992-7294026)
chr3 (314-398)||(35301210-35301292)
chr3 (663-697)||(51673007-51673041)
[»] chr1 (14 HSPs)
chr1 (7-201)||(40224938-40225133)
chr1 (205-266)||(40225173-40225234)
chr1 (619-697)||(39010915-39010992)
chr1 (619-697)||(50141828-50141905)
chr1 (619-697)||(31436921-31436996)
chr1 (619-702)||(36690460-36690542)
chr1 (619-702)||(36706561-36706643)
chr1 (619-702)||(40610330-40610412)
chr1 (654-695)||(15083074-15083115)
chr1 (259-310)||(40225299-40225350)
chr1 (654-697)||(51703005-51703048)
chr1 (663-697)||(30631738-30631772)
chr1 (654-702)||(7503600-7503649)
chr1 (660-697)||(28716284-28716321)
[»] scaffold0501 (1 HSPs)
scaffold0501 (619-704)||(10402-10486)
[»] chr2 (9 HSPs)
chr2 (259-399)||(18106927-18107065)
chr2 (619-697)||(34249681-34249759)
chr2 (619-707)||(14140222-14140309)
chr2 (663-703)||(11229208-11229248)
chr2 (653-692)||(23880229-23880268)
chr2 (657-695)||(8848722-8848760)
chr2 (657-695)||(27490757-27490795)
chr2 (654-695)||(38821372-38821414)
chr2 (663-701)||(43725349-43725387)
[»] chr7 (10 HSPs)
chr7 (619-703)||(21752759-21752842)
chr7 (660-706)||(21858888-21858934)
chr7 (657-702)||(10591290-10591335)
chr7 (663-703)||(25887727-25887767)
chr7 (657-705)||(26153798-26153846)
chr7 (619-702)||(5198647-5198730)
chr7 (657-704)||(12142022-12142069)
chr7 (154-197)||(37511752-37511795)
chr7 (663-697)||(155874-155908)
chr7 (657-695)||(13152599-13152637)
[»] chr4 (13 HSPs)
chr4 (620-692)||(38844388-38844459)
chr4 (619-697)||(31275247-31275324)
chr4 (619-703)||(5234358-5234441)
chr4 (620-697)||(25523089-25523165)
chr4 (657-702)||(15596534-15596579)
chr4 (619-697)||(51717177-51717254)
chr4 (657-697)||(1033286-1033326)
chr4 (657-697)||(5123483-5123523)
chr4 (657-701)||(51389454-51389498)
chr4 (653-696)||(3286952-3286995)
chr4 (657-692)||(53583026-53583061)
chr4 (654-695)||(37297055-37297096)
chr4 (654-695)||(45082987-45083028)
[»] chr5 (10 HSPs)
chr5 (619-697)||(27392595-27392672)
chr5 (619-709)||(33567120-33567209)
chr5 (284-387)||(14625533-14625633)
chr5 (619-695)||(33243636-33243711)
chr5 (654-695)||(18660765-18660806)
chr5 (619-704)||(31284280-31284364)
chr5 (657-704)||(9714021-9714068)
chr5 (657-695)||(1274364-1274402)
chr5 (663-697)||(11767883-11767917)
chr5 (657-703)||(24431505-24431551)
[»] chr8 (5 HSPs)
chr8 (663-701)||(24946143-24946181)
chr8 (657-703)||(40102161-40102207)
chr8 (654-695)||(22719446-22719487)
chr8 (654-695)||(24479242-24479283)
chr8 (654-695)||(31249548-31249589)
[»] scaffold0014 (1 HSPs)
scaffold0014 (654-701)||(124288-124336)
[»] chr6 (3 HSPs)
chr6 (654-697)||(30733144-30733187)
chr6 (663-697)||(24752375-24752409)
chr6 (663-697)||(26378278-26378312)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 51588264 - 51587939
Alignment:
Q  7 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  51588264 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatggagtctacgacgatggataggggcgaaaacattgatgtaatca 51588165  T
Q  106 acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct 205  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51588164 acggcggaggataggtgagagagat--------agagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct 51588073  T
Q  206 gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51588072 gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtggtggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat 51587973  T
Q  306 tgtcgtttgtgaagtagtagaaacaaagatttgt 339  Q
    ||||||||||||||||||||||||||||||||||    
T  51587972 tgtcgtttgtgaagtagtagaaacaaagatttgt 51587939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 697
Target Start/End: Complemental strand, 7231976 - 7231899
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||| | | ||||||||||||||||||||    
T  7231976 cattgtttttgaccaatgaaaagagagaaaaaa-taaattgtcacaaaagttgtatcaaatggttgttcaaatatcact 7231899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 51587938 - 51587890
Alignment:
Q  488 gtttgccca-aaaagctgctggtggaggtgtttgttacgatgaagggac 535  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51587938 gtttgcccagaaaagctgctggtggaggtgtttgttacgatgaagggac 51587890  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 619 - 692
Target Start/End: Complemental strand, 37215201 - 37215129
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaata 692  Q
    |||||||||||||||||||||||||||       ||| |||||||||||||||||| |||||||||||||||||    
T  37215201 cattgtttttgaccaatgaaaagagagaaaaaa-taagttgtcacaaaagttgtctcatatggttgttcaaata 37215129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 654 - 703
Target Start/End: Original strand, 51410939 - 51410988
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  51410939 aaattgtcacaaaagttatctcatatggttgttcaaataacactgctcat 51410988  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 703
Target Start/End: Complemental strand, 37303044 - 37302961
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    |||||||||| ||||||||||||||||        ||||||||||||||||||||| ||||| ||||||||||| |||| |||||    
T  37303044 cattgttttttaccaatgaaaagagagaaaaaag-aaattgtcacaaaagttgtctcatatgcttgttcaaataacactactcat 37302961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 620 - 697
Target Start/End: Original strand, 37303485 - 37303561
Alignment:
Q  620 attgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||||||||| ||||||||||||||       |||||||||||||||||||||| |||| |||||||||||| ||||    
T  37303485 attgtttttgatcaatgaaaagagagaaaaaa-taaattgtcacaaaagttgtctcatatagttgttcaaataacact 37303561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 704
Target Start/End: Complemental strand, 42475947 - 42475863
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcatt 704  Q
    ||||| |||||||||||||||||||||       ||| || ||||||||||||||| ||||||||||||||||| |||| ||||||    
T  42475947 cattggttttgaccaatgaaaagagagaaaaaa-taagttttcacaaaagttgtcttatatggttgttcaaataacactactcatt 42475863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 703
Target Start/End: Complemental strand, 28300615 - 28300533
Alignment:
Q  620 attgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    ||||||||||||||||||||||||||        || ||||||||| |||||| | |||||||||||||||||||||| |||||    
T  28300615 attgtttttgaccaatgaaaagagagaaaataa-aagttgtcacaagagttgtatcatatggttgttcaaatatcactactcat 28300533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 697
Target Start/End: Complemental strand, 20380859 - 20380782
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||||||||||||||||||||| |||        || |||||||||||||||| ||| ||||||||||||||||||||    
T  20380859 cattgtttttgaccaatgaaaagtgagaaaaaag-aagttgtcacaaaagttgtttaaaatggttgttcaaatatcact 20380782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 697
Target Start/End: Original strand, 44695112 - 44695190
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||| ||||||||||| ||||       |||||| ||||||||||||| | | ||||||||||||||||||||    
T  44695112 cattgtttttaaccaatgaaaaaagagaaaaaaataaattatcacaaaagttgtatgaaatggttgttcaaatatcact 44695190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 695
Target Start/End: Complemental strand, 5244273 - 5244235
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  5244273 ttgtcacaaaagttgtaaaatatggttgttcaaatatca 5244235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 7294026 - 7293992
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||| ||||||||||||||||||||    
T  7294026 caaaagttgtctaaaatggttgttcaaatatcact 7293992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 35301292 - 35301210
Alignment:
Q  314 gtgaagtagtagaaacaaagatttgtt--tgtttgttgtttttagaagggaaagaaaggtgaagagaaaaagggttcaggcttatga 398  Q
    |||||| ||||||||||||| |||||   |||||||| ||||||||||||||||    ||||||| |||||||||| | ||||||||    
T  35301292 gtgaagcagtagaaacaaaggtttgtgagtgtttgttatttttagaagggaaag----gtgaagaaaaaaagggtttatgcttatga 35301210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 51673007 - 51673041
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||| ||||||||||||||||||||    
T  51673007 caaaagttgtctaaaatggttgttcaaatatcact 51673041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 6e-73; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 40224938 - 40225133
Alignment:
Q  7 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca 105  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||  ||||||||||||| ||||||||    
T  40224938 aagagcgacatcagcaatggagtgatacttctgcatctgaaggatttggatccaatggagtctccgacgatggatagcggcgaaaacattgctgtaatca 40225037  T
Q  106 acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtct 201  Q
     |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40225038 gcggcggaggagaggtgagagagatgagaacagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtct 40225133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 40225173 - 40225234
Alignment:
Q  205 tgaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgg 266  Q
    |||||||| | |||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  40225173 tgaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttgg 40225234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 697
Target Start/End: Original strand, 39010915 - 39010992
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||||||||||||||||       ||| |||||||||||||||||| ||||||||||||||||| ||||    
T  39010915 cattgtttttgaccaatgaaaagagagaaaaaa-taagttgtcacaaaagttgtctcatatggttgttcaaataacact 39010992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 697
Target Start/End: Complemental strand, 50141905 - 50141828
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||| |||| |||||||||||| ||||    
T  50141905 cattgtttttgaccaatgaaaagagagagaaaa-taaattgtcacaaaagttgtctcatatagttgttcaaataacact 50141828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 697
Target Start/End: Original strand, 31436921 - 31436996
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||||||||||||||||||||||||        |||||||||||||||||| ||| ||||||||||||||||| ||||    
T  31436921 cattgtttttgaccaatgaaaagaga---aaaaataaattgtcacaaaagttatctcatatggttgttcaaataacact 31436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 702
Target Start/End: Complemental strand, 36690542 - 36690460
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctca 702  Q
    |||||||||||||||||||||| ||||       ||| |||||||||||||||||| ||||||||||||||||| |||| ||||    
T  36690542 cattgtttttgaccaatgaaaatagagagaaaa-taagttgtcacaaaagttgtctcatatggttgttcaaataacactactca 36690460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 702
Target Start/End: Complemental strand, 36706643 - 36706561
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctca 702  Q
    |||||||||||||||||||||| ||||       ||| |||||||||||||||||| ||||||||||||||||| |||| ||||    
T  36706643 cattgtttttgaccaatgaaaatagagagaaaa-taagttgtcacaaaagttgtctcatatggttgttcaaataacactactca 36706561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 702
Target Start/End: Original strand, 40610330 - 40610412
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctca 702  Q
    |||||||||||||||||||||||||||        || |||||||||||||||||| | |||| ||||||||||||||| ||||    
T  40610330 cattgtttttgaccaatgaaaagagagagaaaag-aagttgtcacaaaagttgtctcaaatggatgttcaaatatcactactca 40610412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 695
Target Start/End: Original strand, 15083074 - 15083115
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  15083074 aaattgtcacaaaagttgtcaaaaatggttgttcaaatatca 15083115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 40225299 - 40225350
Alignment:
Q  259 gatgttgggaagaacaaagatcttaggtcgaaatctggctttagaattgtcg 310  Q
    ||||| ||||||||||| ||| || | |||||||||||||||||||||||||    
T  40225299 gatgtcgggaagaacaatgatgttggttcgaaatctggctttagaattgtcg 40225350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 697
Target Start/End: Complemental strand, 51703048 - 51703005
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||    
T  51703048 aaattatcacaaaagttgtctgaaatggttgttcaaatatcact 51703005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 30631772 - 30631738
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||| ||||||||||||||||||||    
T  30631772 caaaagttgtctaaaatggttgttcaaatatcact 30631738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 702
Target Start/End: Original strand, 7503600 - 7503649
Alignment:
Q  654 aaattgtcac-aaaagttgtctaatatggttgttcaaatatcactgctca 702  Q
    |||||||||| ||||||||| | | |||||||||||||||||||||||||    
T  7503600 aaattgtcaccaaaagttgtatgaaatggttgttcaaatatcactgctca 7503649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 28716284 - 28716321
Alignment:
Q  660 tcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  28716284 tcacaaaagttgtctcaaatggttgttcaaatatcact 28716321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 619 - 704
Target Start/End: Complemental strand, 10486 - 10402
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcatt 704  Q
    |||||||||||||||||||||||||||       ||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  10486 cattgtttttgaccaatgaaaagagagagaaaa-taagttgtcacaaaagttgtctcatatggttgttcaaataacactgctcatt 10402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 18106927 - 18107065
Alignment:
Q  259 gatgttgggaagaacaaagatcttaggtcgaaatctggctttagaattgtcgtttgtgaagtagtagaaacaaagatttg--tttgtttgttgtttttag 356  Q
    ||||| ||||||||||| ||| || |||||||||||| ||||| ||||||||   |||||  | |||||  |||| ||||  | ||||||||||||||||    
T  18106927 gatgtcgggaagaacaatgatgttgggtcgaaatctgtctttaaaattgtcgcaggtgaaacaatagaatgaaaggtttgggtgtgtttgttgtttttag 18107026  T
Q  357 aagggaaagaaaggtgaagagaaaaagggttcaggcttatgag 399  Q
    ||||||||    ||||||||||||||||||| |||||||||||    
T  18107027 aagggaaa----ggtgaagagaaaaagggtttaggcttatgag 18107065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 619 - 697
Target Start/End: Original strand, 34249681 - 34249759
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||||||||||||||||       ||| ||||||||||| |||||| ||||||||||||||||| ||||    
T  34249681 cattgtttttgaccaatgaaaagagagaaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacact 34249759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 707
Target Start/End: Complemental strand, 14140309 - 14140222
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcattaaa 707  Q
    |||||||||||||||||||||||||||        ||||||||||||||||| | | | ||| |||||||||||||||| |||||||||    
T  14140309 cattgtttttgaccaatgaaaagagagaaaaaag-aaattgtcacaaaagttattttaaatgattgttcaaatatcactactcattaaa 14140222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 663 - 703
Target Start/End: Complemental strand, 11229248 - 11229208
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  11229248 caaaagttgtctaaaatggttgttcaaatatcactactcat 11229208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 692
Target Start/End: Original strand, 23880229 - 23880268
Alignment:
Q  653 taaattgtcacaaaagttgtctaatatggttgttcaaata 692  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  23880229 taaattgtcataaaagttgtctcatatggttgttcaaata 23880268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 695
Target Start/End: Original strand, 8848722 - 8848760
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  8848722 ttgtcacaaaagttgtcaaaaatggttgttcaaatatca 8848760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 695
Target Start/End: Original strand, 27490757 - 27490795
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  27490757 ttgtcacaaaagttgtcaaaaatggttgttcaaatatca 27490795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 38821414 - 38821372
Alignment:
Q  654 aaattgtcacaaaagttgtc-taatatggttgttcaaatatca 695  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  38821414 aaattgtcacaaaagttgtcataaaatggttgttcaaatatca 38821372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 701
Target Start/End: Original strand, 43725349 - 43725387
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcactgctc 701  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  43725349 caaaagttgtctaaaatggttgttcaaatatcaccgctc 43725387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 619 - 703
Target Start/End: Original strand, 21752759 - 21752842
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||| | |||| |||||||||||| |||| |||||    
T  21752759 cattgtttttgaccaatgaaaagagagaaaaaa-taaattgtcacaaaagttgtttcatattgttgttcaaataacactactcat 21752842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 706
Target Start/End: Original strand, 21858888 - 21858934
Alignment:
Q  660 tcacaaaagttgtctaatatggttgttcaaatatcactgctcattaa 706  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  21858888 tcacaaaagttgtttaaaatggttgttcaaatatcactactcattaa 21858934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 10591290 - 10591335
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctca 702  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||    
T  10591290 ttgtcacaaaagttgtctcaaatggttgttcaaatatcactactca 10591335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 663 - 703
Target Start/End: Original strand, 25887727 - 25887767
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  25887727 caaaagttgtctaaaatggttgttcaaatatcactactcat 25887767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 657 - 705
Target Start/End: Original strand, 26153798 - 26153846
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctcatta 705  Q
    |||||||| ||||||||| ||||| |||||||||||||||| |||||||    
T  26153798 ttgtcacataagttgtctcatatgtttgttcaaatatcactactcatta 26153846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 702
Target Start/End: Complemental strand, 5198730 - 5198647
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatg-gttgttcaaatatcactgctca 702  Q
    |||||||||||||| ||||||||||||        ||||| ||||| ||||||||||| ||| ||||||||||||||||||||||    
T  5198730 cattgtttttgaccgatgaaaagagagaaaaaag-aaattatcacataagttgtctaaaatgagttgttcaaatatcactgctca 5198647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 704
Target Start/End: Original strand, 12142022 - 12142069
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctcatt 704  Q
    |||||||||||||||| | | |||||||||||||||||||| ||||||    
T  12142022 ttgtcacaaaagttgtatcaaatggttgttcaaatatcactactcatt 12142069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 37511752 - 37511795
Alignment:
Q  154 gcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgc 197  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  37511752 gcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgc 37511795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 155908 - 155874
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||| ||||||||||||||||||||    
T  155908 caaaagttgtctaaaatggttgttcaaatatcact 155874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 695
Target Start/End: Complemental strand, 13152637 - 13152599
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  13152637 ttgtcacaaaagttgtcaaaaatggttgttcaaatatca 13152599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 692
Target Start/End: Complemental strand, 38844459 - 38844388
Alignment:
Q  620 attgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaata 692  Q
    ||||||||||||||||||||||||||       ||| |||||||||||||||||| |||||||||||||||||    
T  38844459 attgtttttgaccaatgaaaagagagagaaaa-taagttgtcacaaaagttgtctcatatggttgttcaaata 38844388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 697
Target Start/End: Original strand, 31275247 - 31275324
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| | | ||||||||||||||||||||    
T  31275247 cattgtttttgaccaatgaaaagagagaaaaaag-aaattgtcacaaaagttgtatcaaatggttgttcaaatatcact 31275324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 703
Target Start/End: Complemental strand, 5234441 - 5234358
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    ||||||||||||||||| |||||||||        ||||||||||||||||||| | | |||||||||||||||||||| |||||    
T  5234441 cattgtttttgaccaataaaaagagagaaaaaaa-aaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactcat 5234358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 620 - 697
Target Start/End: Complemental strand, 25523165 - 25523089
Alignment:
Q  620 attgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||||||||||||||||||||||||       ||| || ||||||||||||||| ||||||||||||||||| ||||    
T  25523165 attgtttttgaccaatgaaaagagagagaaaa-taagttatcacaaaagttgtctcatatggttgttcaaataacact 25523089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 15596534 - 15596579
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctca 702  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||    
T  15596534 ttgtcacaaaagttgtttaaaatggttgttcaaatatcactactca 15596579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 697
Target Start/End: Complemental strand, 51717254 - 51717177
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||| |||||||||||||||||||||        ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  51717254 cattgattttgaccaatgaaaagagagaaaaaag-aaattgtcacataagttgtctcatatgattgttcaaatatcact 51717177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 657 - 697
Target Start/End: Original strand, 1033286 - 1033326
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  1033286 ttgtcacaaaagttgtttaaaatggttgttcaaatatcact 1033326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 657 - 697
Target Start/End: Complemental strand, 5123523 - 5123483
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  5123523 ttgtcacaaaagttgtctcatatggttgttcaaataacact 5123483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 657 - 701
Target Start/End: Original strand, 51389454 - 51389498
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctc 701  Q
    |||||||||||||||| | | ||||||||||||||||||||||||    
T  51389454 ttgtcacaaaagttgtatcaaatggttgttcaaatatcactgctc 51389498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Original strand, 3286952 - 3286995
Alignment:
Q  653 taaattgtcacaaaagttgtctaatatggttgttcaaatatcac 696  Q
    |||||||||||||||||||| | | |||||||||||||||||||    
T  3286952 taaattgtcacaaaagttgtgtgaaatggttgttcaaatatcac 3286995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 692
Target Start/End: Complemental strand, 53583061 - 53583026
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaata 692  Q
    |||||||||||||||||| |||||||||||||||||    
T  53583061 ttgtcacaaaagttgtctcatatggttgttcaaata 53583026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 37297096 - 37297055
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  37297096 aaattgtcacaaaagttgtaaaaaatggttgttcaaatatca 37297055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 45083028 - 45082987
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    ||||| |||||||||||||| || ||||||||||||||||||    
T  45083028 aaattatcacaaaagttgtcaaaaatggttgttcaaatatca 45082987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 697
Target Start/End: Complemental strand, 27392672 - 27392595
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||||||||||||||||||||||||        ||| |||||||||||||||||| ||||||||||||||||| ||||    
T  27392672 cattgtttttgaccaatgaaaagaga-aaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaataacact 27392595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 709
Target Start/End: Complemental strand, 33567209 - 33567120
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcattaaatt 709  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| | | ||||||||||| |||||||| ||| |||||||    
T  33567209 cattgtttttgaccaatgaaaagagagaaaaaag-aaattgtcacaaaagttgtatcaaatggttgttcatatatcactactctttaaatt 33567120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 14625633 - 14625533
Alignment:
Q  284 ggtcgaaatctggctttagaattgtcgtttgtgaagtagtagaaacaaagatt-tgtttgtttgttgtttttagaagggaaagaaaggtgaagagaaaaa 382  Q
    ||||| ||||||| ||||||||||||    |||||  | ||||||||||| || ||| |||||||||||||||||||||    |||||||||||||||||    
T  14625633 ggtcggaatctggatttagaattgtcagaggtgaaacaatagaaacaaaggttgtgtgtgtttgttgtttttagaaggg----aaaggtgaagagaaaaa 14625538  T
Q  383 gggtt 387  Q
    |||||    
T  14625537 gggtt 14625533  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 695
Target Start/End: Complemental strand, 33243711 - 33243636
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    |||||||||| ||||||||||||||||       |||||||||||||||||| ||| | ||||||||||||||||||    
T  33243711 cattgtttttaaccaatgaaaagagagaaaaaa-taaattgtcacaaaagttatctgaaatggttgttcaaatatca 33243636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 18660806 - 18660765
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  18660806 aaattgtcacaaaagttgtcaaaaatggttgttcaaatatca 18660765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 704
Target Start/End: Complemental strand, 31284364 - 31284280
Alignment:
Q  619 cattgtttttgaccaatgaaaagagagnnnnnnntaaattgtcacaaaagttgtctaatatggttgttcaaatatcactgctcatt 704  Q
    |||||||||| ||||||||||||||||        || ||||| |||||||||| | | |||||||||||||||||||||||||||    
T  31284364 cattgtttttaaccaatgaaaagagagagaaaag-aagttgtcgcaaaagttgtatgaaatggttgttcaaatatcactgctcatt 31284280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 704
Target Start/End: Complemental strand, 9714068 - 9714021
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctcatt 704  Q
    ||||||||| |||||| | |||||||||||||||||||||| ||||||    
T  9714068 ttgtcacaagagttgtatcatatggttgttcaaatatcactactcatt 9714021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 695
Target Start/End: Complemental strand, 1274402 - 1274364
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  1274402 ttgtcacaaaagttgtcaaaaatggttgttcaaatatca 1274364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 11767917 - 11767883
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||| ||||||||||||||||||||    
T  11767917 caaaagttgtctaaaatggttgttcaaatatcact 11767883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 703
Target Start/End: Complemental strand, 24431551 - 24431505
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    ||||||||| |||||||| | |||||||||||||||||||| |||||    
T  24431551 ttgtcacaatagttgtctcaaatggttgttcaaatatcactactcat 24431505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 701
Target Start/End: Original strand, 24946143 - 24946181
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcactgctc 701  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24946143 caaaagttgtctaaaatggttgttcaaatatcactgctc 24946181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 703
Target Start/End: Original strand, 40102161 - 40102207
Alignment:
Q  657 ttgtcacaaaagttgtctaatatggttgttcaaatatcactgctcat 703  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||    
T  40102161 ttgtcacaaaagttgtctcatatggttgttcaaataacactactcat 40102207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 22719487 - 22719446
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  22719487 aaattgtcacaaaagttgtaaaaaatggttgttcaaatatca 22719446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 24479283 - 24479242
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    ||||||||||||||||| || || ||||||||||||||||||    
T  24479283 aaattgtcacaaaagttatcaaaaatggttgttcaaatatca 24479242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Original strand, 31249548 - 31249589
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatca 695  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  31249548 aaattgtcacaaaagttgtaaaaaatggttgttcaaatatca 31249589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 701
Target Start/End: Original strand, 124288 - 124336
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatg-gttgttcaaatatcactgctc 701  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  124288 aaattgtcacataagttgtctaaaatgagttgttcaaatatcactgctc 124336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 697
Target Start/End: Original strand, 30733144 - 30733187
Alignment:
Q  654 aaattgtcacaaaagttgtctaatatggttgttcaaatatcact 697  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||    
T  30733144 aaattgtcacaaaagttgtctcaaatggttgtttaaatatcact 30733187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 24752375 - 24752409
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||| ||||||||||||||||||||    
T  24752375 caaaagttgtctaaaatggttgttcaaatatcact 24752409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 26378312 - 26378278
Alignment:
Q  663 caaaagttgtctaatatggttgttcaaatatcact 697  Q
    |||||||||||||| ||||||||||||||||||||    
T  26378312 caaaagttgtctaaaatggttgttcaaatatcact 26378278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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