View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4882-Insertion-6 (Length: 240)
Name: NF4882-Insertion-6
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4882-Insertion-6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 100 - 240
Target Start/End: Original strand, 12289236 - 12289385
Alignment:
| Q |
100 |
ttgtttctcaaaagtcttcttt---cacaaattcggttatggttagggtttcataattcgcattttgcaaaatgttgtacaaa------cattctcaatt |
190 |
Q |
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| T |
12289236 |
ttgtttctcaaaagccttcttttttcacaaattcggttatggttagggtttcataattcgcattttgcaaaatgttgtacaaatcaactcattctcaatt |
12289335 |
T |
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| Q |
191 |
ttcattctctaattcgaaaattatgaattgattctactttttcattcttc |
240 |
Q |
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| T |
12289336 |
ttcattctctaattcgaaaattatgaattgattctactttttcattcttc |
12289385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 12194404 - 12194541
Alignment:
| Q |
100 |
ttgtttctcaaaagtcttctttcacaaattcggttatggttagggtttcataattcgcattttgcaaaatgttgtacaaa------cattctcaattttc |
193 |
Q |
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| T |
12194404 |
ttgtttctcaaaag-cttcattcacaaattcggttatggttggggattcgtaattcgcatttcgtataatgttgtacaaatcaactcattctcaattttc |
12194502 |
T |
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| Q |
194 |
attctctaattcgaaaattatgaattgattctacttttt |
232 |
Q |
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| T |
12194503 |
actctccaattcccaaaatatgaattgattctatttttt |
12194541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 12289152 - 12289200
Alignment:
| Q |
8 |
actacgaaacaccaaaacgcttcgtatc-ttatatagtgccaaccacaa |
55 |
Q |
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| T |
12289152 |
actacgaaacaccaaaacgcttcgtatctttatatagtgccagccacaa |
12289200 |
T |
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