View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4882_high_1 (Length: 333)
Name: NF4882_high_1
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4882_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 14664439 - 14664749
Alignment:
| Q |
18 |
actcttgtttctcctcactttccaattccatgaaagcaaatcagagaagaagaaactgaagtaaacattgtttgttaaattttgttttatcaaaaacaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
14664439 |
actcttgtttctcctcactttccaattccatgaaagcaaatcagagaagaaaaaactgaagtaaccattgtttgttatattttgttttatcaaa--caaa |
14664536 |
T |
|
| Q |
118 |
cagaacctttgtttgtacccgcaaattcatcacagcttcacgaaatcgttgtttcttctaccgcgcctgtcacaaagggaacaaactaaggtacaaaatt |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14664537 |
cagaacctttgtttgtatccgcaaattcatcatagcttcacgaaatcgttgtttcttctaccgcgcctgtcacaaagggaacaaactaaggtacaaaatt |
14664636 |
T |
|
| Q |
218 |
cataaacccttgtttctgcgtttaattcattcttcatttttcttgtgatattttaannnnnnnatttgataaaatatctctgcattttctgtagcagaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14664637 |
cataaacccttgtttctgcgtttaattcattcttcatttttcttgtgatattttaatttttttatttgataaaatatctctgcattttctgtagcagaat |
14664736 |
T |
|
| Q |
318 |
catagggcaaaat |
330 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
14664737 |
cataggacaaaat |
14664749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University