View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4882_high_2 (Length: 324)
Name: NF4882_high_2
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4882_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 15153417 - 15153098
Alignment:
| Q |
1 |
ttgtaaacctttcaagagaaaaagaacaaattaaaggatccaaccatggtgccattgctgcttgttaaggagtgtgggtgaccgtactgaaattttcatt |
100 |
Q |
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| T |
15153417 |
ttgtaaacctttcaagagaaaaagaacaaattaaaggaaccaaccatggtgccattgctgcttgttaaggagtgttggtgaccgtactgaaattttcatt |
15153318 |
T |
|
| Q |
101 |
tttggctatgctggttcaattatcttcttgcttgctccattactatttacatggggttaaagttgggttttagagatattgacattaaatttgattcaaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15153317 |
tttggctatgctggttcaactatcttcttgcttgctccattactatttacatggggttaaagttgagttttagagatattgacattaaatttgattcaaa |
15153218 |
T |
|
| Q |
201 |
ggttgcactgaatttgattcatggcgggtgtaatgttagacgtccctcttatttgatggttcgtcacatccatgatattctcgcgtagctagatgtcttc |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15153217 |
ggttgcactgaatttgattcttggcgggtgtaatgttagacgtccctcttatttgatggttcgtcacatccatgatattctcgcgtagctagacgtcttc |
15153118 |
T |
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| Q |
301 |
tatgtggatcatattcttcg |
320 |
Q |
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||||||||||||||| |||| |
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| T |
15153117 |
tatgtggatcatatttttcg |
15153098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 15148727 - 15148616
Alignment:
| Q |
171 |
tagagatattgacattaaatttgattcaaaggttgcactgaatttgattcatggcgggtgtaatgttagacgtccctcttatttgatggttcgtcacatc |
270 |
Q |
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| T |
15148727 |
tagagatattgatgttgaatctgattaaatggttgcattgaatttgattcttgatgggtctaatgtgagatatccctctaatttgatggttcgtcaaacc |
15148628 |
T |
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| Q |
271 |
catgatattctc |
282 |
Q |
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| T |
15148627 |
cttgatattctc |
15148616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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