View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4882_high_3 (Length: 278)
Name: NF4882_high_3
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4882_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 33520365 - 33520115
Alignment:
| Q |
16 |
atattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaatagtcactcctttctttatctcttaattcatattgaagtgttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520365 |
atattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaatagtcactcctttctttatctcttaattcatattgaagtgttt |
33520266 |
T |
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| Q |
116 |
gatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataatgttattgagtattcacgcaccattttctgtaatatacatggg |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520265 |
gatatcacacaagtgatcaagcaaaaacatataaaaaaaa--aatgagatcatataatgttattgagtattcacgcaccattttctgtaatatacatggg |
33520168 |
T |
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| Q |
216 |
catgttatgatattttatctttatgtagcctacaatattctccatgccctttg |
268 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
33520167 |
catgttatgatattttatctttatgtagtctacaatcttctccatgccctttg |
33520115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 33495689 - 33495940
Alignment:
| Q |
16 |
atattaaccaattcataactccag-cccaaatttacataccaaaaaactaccttcaaatagtcactcctttctttatctcttaattcatattgaagtgtt |
114 |
Q |
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||||||||||||||| | |||| |||||||||||||| |||||||| ||||||||| |||||||||||||||| |||| |||| |||||| ||||||| |
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| T |
33495689 |
atattaaccaattcaaacttccatacccaaatttacataacaaaaaaccaccttcaaagagtcactcctttctttgtctcataatgcatattaaagtgtt |
33495788 |
T |
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| Q |
115 |
tgatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataatgttattgagtattcacgcaccattttctgtaatatacatgg |
214 |
Q |
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|||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33495789 |
tgatattaaacaagtgatcaagcaaaaacatataaaaagaa--aatgagatcatataatgttattgagtattcacacaccattttctgtaatatacatgg |
33495886 |
T |
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| Q |
215 |
gcatgttatgatattttatctttatgtagcctacaatattctccatgccctttg |
268 |
Q |
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||| ||| || |||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
33495887 |
gcaggttttggtattttatctttatgtagtctacaatcttctccatgccctttg |
33495940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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