View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4882_high_4 (Length: 266)
Name: NF4882_high_4
Description: NF4882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4882_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 6943234 - 6943408
Alignment:
| Q |
55 |
atgcattaagttacaaccatacaaagatccatgt--------aaaaactgtgcagcaattagccaagtctccaagggataaatgattgaaacttacctct |
146 |
Q |
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| T |
6943234 |
atgcattaagtttcaaccatacaaagatccatatcaatttttaaaaactgtgcagcaattagctaagtctccaagagattaatgattgaaacttacctca |
6943333 |
T |
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| Q |
147 |
tgatatttacgggcattcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct |
221 |
Q |
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| T |
6943334 |
tgataattacaggcattcatgaagaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct |
6943408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 6940139 - 6940212
Alignment:
| Q |
148 |
gatatttacgggcattcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct |
221 |
Q |
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| T |
6940139 |
gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct |
6940212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 6787458 - 6787376
Alignment:
| Q |
163 |
tcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagctgattttgaaaacttggctgttaag |
245 |
Q |
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| T |
6787458 |
tcatgaaaaggaattggatattccataaacgtccgggaggttagcaaacaaaacaagctgattttgaaaacttggttgttaag |
6787376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 6787579 - 6787457
Alignment:
| Q |
31 |
tagtccaatcaaaatatatattcaatgcattaagttacaaccatacaaagatcca--------tgtaaaaactgtgcagcaattagccaagtctccaagg |
122 |
Q |
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| T |
6787579 |
tagtccaatcaaaatatacattaaatgcattgagtttcacccatacaaagatccatatgaattttttaaaactgtgcagccattagctaagtctcccaag |
6787480 |
T |
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| Q |
123 |
gataaatgattgaaacttacctc |
145 |
Q |
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| T |
6787479 |
agtaaatgcttgaaacttacctc |
6787457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 6940106 - 6940143
Alignment:
| Q |
90 |
aaaactgtgcagcaattagccaagtctccaagggataa |
127 |
Q |
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| T |
6940106 |
aaaactgtgcagcaattagctaagtctccaagagataa |
6940143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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