View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4883-Insertion-1 (Length: 922)

Name: NF4883-Insertion-1
Description: NF4883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4883-Insertion-1
NF4883-Insertion-1
[»] chr2 (16 HSPs)
chr2 (286-633)||(32148542-32148897)
chr2 (636-922)||(32149013-32149303)
chr2 (313-596)||(32185384-32185668)
chr2 (313-596)||(32177227-32177510)
chr2 (8-178)||(32148274-32148443)
chr2 (763-919)||(1173862-1174017)
chr2 (367-601)||(32161059-32161295)
chr2 (313-561)||(32179967-32180211)
chr2 (484-601)||(32153527-32153646)
chr2 (8-81)||(32128003-32128076)
chr2 (28-133)||(32152960-32153065)
chr2 (658-715)||(32161601-32161658)
chr2 (124-178)||(32153130-32153184)
chr2 (290-329)||(32161014-32161053)
chr2 (95-168)||(32128075-32128156)
chr2 (764-794)||(9034006-9034036)
[»] chr4 (4 HSPs)
chr4 (782-922)||(41727108-41727248)
chr4 (110-175)||(5520517-5520582)
chr4 (761-790)||(12846024-12846053)
chr4 (761-790)||(44123579-44123608)
[»] chr8 (1 HSPs)
chr8 (761-794)||(28224201-28224234)
[»] chr7 (1 HSPs)
chr7 (761-790)||(3483958-3483987)
[»] chr1 (1 HSPs)
chr1 (761-790)||(5665997-5666026)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 286 - 633
Target Start/End: Original strand, 32148542 - 32148897
Alignment:
Q  286 cctcaaattctgttcatgtgatttgatttctcttttcacaacaagtggcttccttcct---tcttcctctcatcacactaacacattctcagttgtaaaa 382  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||| ||||||||||    
T  32148542 cctcaaattctgttcatgtgatttgatttctcttttcacaacatgtggcttccttcctaattcttcctctcatcacactaacacattcttagttgtaaaa 32148641  T
Q  383 atagtttaaacaagaaaactcttacccatcctttgtttattttgttcaaatttatactattaaaaagctaggttaaggtcattttcatttaccttctata 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32148642 atagtttaaacaagaaaactcttacccatcctttgtttattttgttcaaatttatactattaaaaagctaggtta-ggtcattttcatttaccttctata 32148740  T
Q  483 tcatgtgtttaattttgtactctgaattgtttttaattatttcccaatctcataaacgttcacatcacatttttagtatgtctcttggttggtctttgtt 582  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32148741 tcgtgtgtttaattttgtactctgaattgtttttaattatttcccaatctcataaacgttcacatcacatttttagtatgtctcttggttggtctttgtt 32148840  T
Q  583 catttatgtatagtaccacccaagcaag-------tgtcccttttcttattttatgtt 633  Q
    |||||||||||||||||| |||||||||       |||||||||||||||||||||||    
T  32148841 catttatgtatagtacca-ccaagcaagctgcacttgtcccttttcttattttatgtt 32148897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 636 - 922
Target Start/End: Original strand, 32149013 - 32149303
Alignment:
Q  636 ctcatttttgtgtaaacttgggtaccaatttattttctccctaatattaacaatgggtcaaactcatgggattaggg---agtatgaggcaaagtaatgt 732  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  32149013 ctcatttttgtgtgaacttgggtaccaatttattttctccctaatactaacaatgggtcaaactcatgggattaggaggtagtatgaggcaaagtaatgt 32149112  T
Q  733 gattattttgattgcatgatacagggtt-aggctagggtgggagagcttgataggtctcccacaataagcaagcgagaaaaataacttttgacggtcaga 831  Q
    |||||||||||||| ||||||||||| | | ||||| |||||||||||||||||||||||||   | ||||||||| |||||||||||||||||||||||    
T  32149113 gattattttgattgtatgatacagggctcatgctagtgtgggagagcttgataggtctcccatcgtgagcaagcgaaaaaaataacttttgacggtcaga 32149212  T
Q  832 tattaaaattctatgattgttaacatacaccaacaacatcggatactttttaattctcgctttgttctctcttctccatcttcaacctgct 922  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  32149213 tattaaaattctatgattgttaacatacaccaacaacagcggatattttttaattctcgctttgttctctcttctccatcttcaacatgct 32149303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 313 - 596
Target Start/End: Original strand, 32185384 - 32185668
Alignment:
Q  313 ttctcttttcacaacaagtggcttccttccttcttcctctcatcacactaacacattctcagttgtaaaaatagtttaaacaagaaaactcttacccatc 412  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32185384 ttctctcttcacaacaagtggcttcctttcttcttcctctcatcacactaacacattctcagttgtaaaaatagtttaaacaagaaaactcttacccatc 32185483  T
Q  413 ctttgtttattttgttcaaatttatactattaaaaagctaggttaaggtcattttcatttaccttctatatcatgtgtttaattttgtactctgaattgt 512  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||  |||||||||||| ||| |||||||||||||||||||| ||||    
T  32185484 ctttgtttattttgttcaaatttataatatcaaaaagctaggtt-aggtcattttctattaccttctataccatatgtttaattttgtactctgacttgt 32185582  T
Q  513 ttt--taattatttcccaatctcataaacgttcacatcacatttttagtatgtctcttggttggtctttgttcatttatgtatagt 596  Q
    |||  || |||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  32185583 tttgctatttatttcccaatctaataaacgttcacaccacatttttagtgtgtctcttgtttggtctttgttcacttttgtatagt 32185668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 313 - 596
Target Start/End: Original strand, 32177227 - 32177510
Alignment:
Q  313 ttctcttttcacaacaagtggcttccttccttcttcctctcatcacactaacaca--ttctcagttgtaaaaatagtttaaacaagaaaactcttaccca 410  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||   |||||||    
T  32177227 ttctctcttcacaacaagtgggttcctttcttcttcctctcatcacactaacacaaattctcagttgtaaaaatagtttaaacaagaaaa---ttaccca 32177323  T
Q  411 tcctttgtttattttgttcaaatttatactattaaaaagctaggttaaggtcattttcatttaccttctatatcatgtgtttaattttgtactctgaatt 510  Q
    || ||| ||||||| |||||| |||| ||||| |||||||||||||| | ||||||||  |||||||||||| ||| |||||||||||||||||||||||    
T  32177324 tcatttttttatttggttcaagtttaaactatcaaaaagctaggttacg-tcattttctattaccttctataccatatgtttaattttgtactctgaatt 32177422  T
Q  511 gttttt--aattatttcccaatctcataaacgttcacatcacatttttagtatgtctcttggttggtctttgttcatttatgtatagt 596  Q
    ||||||  | |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  32177423 gtttttctatttatttcccaatctcataaatgttcacaccacatttttagtatgtctcttgtttggtctttgttcatttttgtatagt 32177510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 32148274 - 32148443
Alignment:
Q  8 gccaacaaaacaaggaggaaaatagcaagatattgaaatctcataatgctagtattgtatcgtatcttttcaaacttcaaagattacaatggtgtgaatt 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32148274 gccaacaaaacaaggaggaaaataacaagatattgaaatctcataatgctagtattgtatcgtatcttt-caaacttcaaagattacaatggtgtgaatt 32148372  T
Q  108 tatgttggctgcttggatatatatattacataaaagttatgccaaggtggtaatatattattttactagtc 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32148373 tatgttggctgcttggatatatatattacataaaagttatgccaaggtggtaatatattattttactagtc 32148443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 763 - 919
Target Start/End: Original strand, 1173862 - 1174017
Alignment:
Q  763 gctagggtgggagagcttgataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacacc 862  Q
    ||||||||||||||||||||||||||||||||  | |||||| || ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  1173862 gctagggtgggagagcttgataggtctcccaccgtgagcaagtgaaaaatataacttttgacggtcatatattaaaattctatgactgttaacatacacc 1173961  T
Q  863 aacaacatcggatactttttaattctcgctttgttctctcttctccatcttcaacct 919  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1173962 aacaaca-cggatactttttaattctcactttgttctctcttctccatcttcaacct 1174017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 367 - 601
Target Start/End: Original strand, 32161059 - 32161295
Alignment:
Q  367 attctcagttgtaaaaatagtttaaacaagaaaactcttacccatcctttgtttattttgttcaaatttatactattaaaaagctaggttaaggtcattt 466  Q
    |||||| ||||||||||||| | ||| |||||||| |||| || || | ||||||||| |||||||||||||||  ||||||| ||||||| ||||||||    
T  32161059 attctctgttgtaaaaatagctcaaataagaaaacccttatccctcttctgtttatttggttcaaatttatactcctaaaaagttaggtta-ggtcattt 32161157  T
Q  467 tcatttaccttctatatcatgtgtttaattttgtactctgaattgttttt---aattatttcccaatctcataaacgttcacatcacatttttagtatgt 563  Q
    ||  || |||| || | ||||||||| |||||||||||||||||||||||   | ||| |||| ||||||||||| ||||||||||||||||||||||||    
T  32161158 tctattgccttttagaccatgtgtttcattttgtactctgaattgttttttctatttacttccgaatctcataaatgttcacatcacatttttagtatgt 32161257  T
Q  564 ctcttggttggtctttgttcatttatgtatagtaccac 601  Q
    |||||| |||||| ||||||| ||||||||||| ||||    
T  32161258 ctcttgtttggtccttgttcacttatgtatagttccac 32161295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 313 - 561
Target Start/End: Original strand, 32179967 - 32180211
Alignment:
Q  313 ttctcttttcacaacaagtggcttccttccttcttcctctcatcacactaacacattctcagttgtaaaaatagtttaaacaagaaaactcttacccatc 412  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| |||||| ||       |||||||||| | ||| |||||||| |||| || ||    
T  32179967 ttctctcttcacaacaagtagcttccttccttcttcctctcatcacaataacacttt-------gtaaaaatagctcaaataagaaaacccttatccctc 32180059  T
Q  413 ctttgtttattttgttcaaatttatactattaaaaagctaggttaaggtcattttcatttaccttctatatcatgtgtttaattttgtactctgaattgt 512  Q
     | ||||||||| |||||||||||||||  ||||||| |||||| |||||||||||  || |||| || | ||||||||| |||||||||||||||||||    
T  32180060 ttctgtttatttggttcaaatttatactcctaaaaagttaggtttaggtcattttctattgccttttagaccatgtgtttcattttgtactctgaattgt 32180159  T
Q  513 ttt---taattatttcccaatctcataaacgttcacatcacatttttagtat 561  Q
    |||   || |||||||| |||||||||||| |||||||||||||||||||||    
T  32180160 tttttctatttatttccgaatctcataaacattcacatcacatttttagtat 32180211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 484 - 601
Target Start/End: Original strand, 32153527 - 32153646
Alignment:
Q  484 catgtgtttaattttgtactctgaattgttttt--aattatttcccaatctcataaacgttcacatcacatttttagtatgtctcttggttggtctttgt 581  Q
    |||||||||||||||||||||||||||||||||  |  ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  32153527 catgtgtttaattttgtactctgaattgtttttctatctatttcggaatctcataaacgttcacaccacatttttagtatgtctcttgtttggtctttgt 32153626  T
Q  582 tcatttatgtatagtaccac 601  Q
    |||||| |||||||| ||||    
T  32153627 tcatttttgtatagttccac 32153646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 32128003 - 32128076
Alignment:
Q  8 gccaacaaaacaaggaggaaaatagcaagatattgaaatctcataatgctagtattgtatcgtatcttttcaaa 81  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32128003 gccaacaaaacaaggaggaaaataacaagatattgaaatctcataatgctagtattgtatcgtatcttttcaaa 32128076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 32152960 - 32153065
Alignment:
Q  28 aatagcaagatattgaaatctcataatgctagtattgtatcgtatcttttcaaacttcaaagattacaatggtgtgaatttatgttggctgcttggatat 127  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||  |||||||||||||||||||||||| ||||||| |||    
T  32152960 aataacaagatattgaaatcttataatgcttgtattgtatcgtatcttttgaagcttcaaagggtacaatggtgtgaatttatgttggttgcttggttat 32153059  T
Q  128 atatat 133  Q
    ||||||    
T  32153060 atatat 32153065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 658 - 715
Target Start/End: Original strand, 32161601 - 32161658
Alignment:
Q  658 taccaatttattttctccctaatattaacaatgggtcaaactcatgggattagggagt 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  32161601 taccaatttattttctccctaatattaacaatgggtcaaactcataggctttgggagt 32161658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 32153130 - 32153184
Alignment:
Q  124 atatatatattacataaaagttatgccaaggtggtaatatattattttactagtc 178  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  32153130 atatatatattacattaaagatatgccaaggtggtaatatattattttgctagtc 32153184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 32161014 - 32161053
Alignment:
Q  290 aaattctgttcatgtgatttgatttctcttttcacaacaa 329  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32161014 aaattctgttcatgtgatttgatttctcttttcacaacaa 32161053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 32128075 - 32128156
Alignment:
Q  95 aatggtgtgaatttatgttggctgcttgg--------atatatatattacataaaagttatgccaaggtggtaatatattat 168  Q
    |||||||||||||||||||||||||||||        | ||||||||||||| |||| |||| ||| |||||||||||||||    
T  32128075 aatggtgtgaatttatgttggctgcttggttatacatacatatatattacattaaagatatgtcaatgtggtaatatattat 32128156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 764 - 794
Target Start/End: Original strand, 9034006 - 9034036
Alignment:
Q  764 ctagggtgggagagcttgataggtctcccac 794  Q
    |||||||||||||||||||||||||||||||    
T  9034006 ctagggtgggagagcttgataggtctcccac 9034036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 1e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 782 - 922
Target Start/End: Original strand, 41727108 - 41727248
Alignment:
Q  782 ataggtctcccacaataagcaagcgagaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacaccaacaacatcggatactttt 881  Q
    |||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||    
T  41727108 ataggtctcccaccgtgagcaagcgaaaaaaataacttttgacggtcagatattaaaattctatgattgttaacatacaccaacaacaccatatactttt 41727207  T
Q  882 taattctcgctttgttctctcttctccatcttcaacctgct 922  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41727208 taattctcgctttgttctctcttctccatcttcaacctgct 41727248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 5520582 - 5520517
Alignment:
Q  110 tgttggctgcttggatatatatattacataaaagttatgccaaggtggtaatatattattttacta 175  Q
    |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||  ||||||||    
T  5520582 tgttggctgcttggttatatatattacataaaagttatgctaagggggtaatatatctttttacta 5520517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 790
Target Start/End: Original strand, 12846024 - 12846053
Alignment:
Q  761 aggctagggtgggagagcttgataggtctc 790  Q
    ||||||||||||||||||||||||||||||    
T  12846024 aggctagggtgggagagcttgataggtctc 12846053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 790
Target Start/End: Complemental strand, 44123608 - 44123579
Alignment:
Q  761 aggctagggtgggagagcttgataggtctc 790  Q
    ||||||||||||||||||||||||||||||    
T  44123608 aggctagggtgggagagcttgataggtctc 44123579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 28224201 - 28224234
Alignment:
Q  761 aggctagggtgggagagcttgataggtctcccac 794  Q
    ||||||||||||||||||||||||||||| ||||    
T  28224201 aggctagggtgggagagcttgataggtcttccac 28224234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 790
Target Start/End: Original strand, 3483958 - 3483987
Alignment:
Q  761 aggctagggtgggagagcttgataggtctc 790  Q
    ||||||||||||||||||||||||||||||    
T  3483958 aggctagggtgggagagcttgataggtctc 3483987  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 790
Target Start/End: Original strand, 5665997 - 5666026
Alignment:
Q  761 aggctagggtgggagagcttgataggtctc 790  Q
    ||||||||||||||||||||||||||||||    
T  5665997 aggctagggtgggagagcttgataggtctc 5666026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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