View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4883-Insertion-2 (Length: 453)
Name: NF4883-Insertion-2
Description: NF4883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4883-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 3009971 - 3010412
Alignment:
| Q |
8 |
ttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccactttcctatgc |
107 |
Q |
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| T |
3009971 |
ttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccactttcctatgc |
3010070 |
T |
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| Q |
108 |
ttcagtttagtctaataaatttaatacctgacaatctttgagggaaatgcttgcatataaataatgtattgttacatgtggannnnnnnnncctttaaat |
207 |
Q |
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| T |
3010071 |
ttcagtttagtctaataaatttaatacctgacaatctttgagggaaatgcttgcatataaataatgtattgttacatgtggatttttttttcctttaaat |
3010170 |
T |
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| Q |
208 |
tttgtgtaactatgtgaatgtgcccagacatattttatttgggtttatgaccaaattagtatttcggttaccaactctnnnnnnnnnnggttacaatcca |
307 |
Q |
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| T |
3010171 |
tttgtgtaactatgtgaatgtgcccagacatattttatttgggtttatgaccaaataagtatttcggttaccaactct-aaaaaaaaaggttacaatcca |
3010269 |
T |
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| Q |
308 |
attttcccaacatgttcactaaagagcaatgtgaacattagtgcacatatagtgtcattgccattattgttactccaaatggaaaacccaatttgatgga |
407 |
Q |
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| T |
3010270 |
attttcccaacatgttcactaaagagcaatgtgaacattagtgcacatatagtgtcattgccattattgttactctaaatggaaaacccaatttgatgga |
3010369 |
T |
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| Q |
408 |
attcagatttgctctagtacctatatgttccagtttccaagtt |
450 |
Q |
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| T |
3010370 |
attcagatctgctctagtacctatatgttccagtttccaagtt |
3010412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 3019051 - 3019131
Alignment:
| Q |
315 |
caacatgttcactaaagagcaatgtgaacattagtgcacatatagtgtcattgccattattgttactccaaatggaaaaccc |
396 |
Q |
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| T |
3019051 |
caacatgttctttaaagagcaatgtgaacgttggtgcatataaa-tgtcattgccattattgttactccaaatgaaaaaccc |
3019131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 2764948 - 2764997
Alignment:
| Q |
200 |
ctttaaattttgtgtaactatgtgaatgtgcccagacatattttatttgg |
249 |
Q |
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| T |
2764948 |
ctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgg |
2764997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 43494976 - 43495033
Alignment:
| Q |
201 |
tttaaattttgtgtaactatgtgaatgtgcccagacatattttatttgggtttatgac |
258 |
Q |
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| T |
43494976 |
tttaaattttgtgtaactaagtgagtgtgtccaaatataatttatttgggtttgtgac |
43495033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 11063459 - 11063411
Alignment:
| Q |
214 |
taactatgtgaatgtgcccagacatattttatttgggtttatgaccaaat |
263 |
Q |
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| T |
11063459 |
taactatgtgagtgtgccaa-acatattttatttgggtttgtgaccaaat |
11063411 |
T |
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