View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4883-Insertion-4 (Length: 213)

Name: NF4883-Insertion-4
Description: NF4883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4883-Insertion-4
NF4883-Insertion-4
[»] chr1 (3 HSPs)
chr1 (10-210)||(30337633-30337831)
chr1 (139-191)||(30321812-30321862)
chr1 (14-81)||(30333492-30333556)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 30337633 - 30337831
Alignment:
Q  10 aagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtgacacctgaaattgcagatacg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |    
T  30337633 aagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtaacacctgaaattccagatatg 30337732  T
Q  110 tactgtaatttcagagatttaattactagtttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaattagaattgttttattattct 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  30337733 tactgtaatttcagtgatttaattactagtttcctttatgttgtaagcctt--gagccaattaagaagttaatgaaaaatttgaattgttttattattct 30337830  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 30321812 - 30321862
Alignment:
Q  139 tttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaatta 191  Q
    |||||||||| ||||||||||||||  ||||||||||||||||| ||||||||    
T  30321812 tttcctttatattgtaagccttgag--ccaattaagaagttaatgaaaaatta 30321862  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 30333492 - 30333556
Alignment:
Q  14 acttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtt 81  Q
    |||||||||||||||||||||  || ||| |  |||| |||||||||||| |||||||||||||||||    
T  30333492 acttttggctcaaaggctttta-ctattaaa--gtctcgtttgtttgaatgccctaaagtcacttgtt 30333556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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