View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4883_high_1 (Length: 475)

Name: NF4883_high_1
Description: NF4883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4883_high_1
NF4883_high_1
[»] chr1 (3 HSPs)
chr1 (1-456)||(30337176-30337631)
chr1 (1-104)||(30325539-30325642)
chr1 (206-348)||(30325744-30325886)


Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 30337176 - 30337631
Alignment:
Q  1 cagatttcccatggacaactcgcttctccggcgacctctgtcgcttcccaccacccggcattgtttgccgttactcctactttcatcttcttcagtatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  30337176 cagatttcccatggacaactcgcttctccggcgacctctgtcgcttacccccacccggcgttgtttgccgttactcctactttcatcttcttaagtatcg 30337275  T
Q  101 caaactaagatcacacgttgttgagatgaacttcggcaactatgatgccgatgaaaaacaaaatcccaccctaccttgctcccataatgctacctttaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337276 caaactaagatcacacgttgttgagatgaacttcggcaactatgattccgatgaaaaacaaaatcccaccctaccttgctcccataatgctacctttaac 30337375  T
Q  201 tcaactcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaacaaccgagaaaaccctatcattatctctctttccactttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30337376 tcaactcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaacaaccgtgaaaatcctatcattatctctctttccactttcc 30337475  T
Q  301 ctacaactctccaacaactcgttttcatagataacctttctcccattcaggcgtcgttctcatttgccgagtttggaatgattaataaacttcaaattgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337476 ctacaactctccaacaactcgttttcatagataacctttctcccattcaggggtcgttctcatttgccgagtttggaatgattaataaacttcaaattgt 30337575  T
Q  401 caggacacataaatctctggttaggaaagaaaaagaatgatagtttctgatataag 456  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30337576 caggacacataaatctctggttgggaaagaaaaagaatgatagtttctgatataag 30337631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30325539 - 30325642
Alignment:
Q  1 cagatttcccatggacaactcgcttctccggcgacctctgtcgcttcccaccacccggcattgtttgccgttactcctactttcatcttcttcagtatcg 100  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30325539 cagatttcccatggaccactcgcttccccggcgacctctgtcgcttcccaccacccggcattgtttgccgttactcctactttcattttcttcagtatcg 30325638  T
Q  101 caaa 104  Q
    ||||    
T  30325639 caaa 30325642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 348
Target Start/End: Original strand, 30325744 - 30325886
Alignment:
Q  206 tcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaacaaccgagaaaaccctatcattatctctctttccactttccctaca 305  Q
    ||| ||||||||||||||||||||  ||  ||||| ||||||||||||||||||||||| ||||||||| || |   ||||||||||| |||||||| ||    
T  30325744 tctcttcacccctttcaactacctccgattactcaccttccgtgaatgcttcaacaacccagaaaaccccattaacctctctctttcccctttccctcca 30325843  T
Q  306 actctccaacaactcgttttcatagataacctttctcccattc 348  Q
     ||||  |||| ||  ||||| | || |||| |||||||||||    
T  30325844 tctctagaacatcttattttctttgacaacccttctcccattc 30325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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