View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4883_low_3 (Length: 361)
Name: NF4883_low_3
Description: NF4883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4883_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 179 - 347
Target Start/End: Complemental strand, 8196610 - 8196442
Alignment:
| Q |
179 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
278 |
Q |
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| T |
8196610 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8196511 |
T |
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| Q |
279 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg |
347 |
Q |
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| T |
8196510 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg |
8196442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 179 - 347
Target Start/End: Complemental strand, 8201370 - 8201202
Alignment:
| Q |
179 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
278 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8201370 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8201271 |
T |
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| Q |
279 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg |
347 |
Q |
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| T |
8201270 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg |
8201202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 8196847 - 8196682
Alignment:
| Q |
13 |
catcacccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaac |
112 |
Q |
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| T |
8196847 |
catcacccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaac |
8196748 |
T |
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| Q |
113 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
178 |
Q |
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| T |
8196747 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8196682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 8201607 - 8201442
Alignment:
| Q |
13 |
catcacccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaac |
112 |
Q |
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| T |
8201607 |
catcacccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaac |
8201508 |
T |
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| Q |
113 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
178 |
Q |
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| T |
8201507 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8201442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 4918040 - 4918121
Alignment:
| Q |
93 |
ttaatagattgatgaaaaacatatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaa |
174 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||| |
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| T |
4918040 |
ttaataggtcgatgaaaaacatatgaattaaagcatggagcaaaagttgatattagaaagtttgcaactttgcattaaggaa |
4918121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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