View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4884-Insertion-1 (Length: 1081)
Name: NF4884-Insertion-1
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 1028; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1028; E-Value: 0
Query Start/End: Original strand, 9 - 1080
Target Start/End: Original strand, 29332576 - 29333644
Alignment:
| Q |
9 |
gaaagcatcggaaaaccccacttctgtacaattcttatcatccacatcataccaaagaggatcatcaataacacacgacagcatcttcatagcaaccgca |
108 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29332576 |
gaaagcatcggaaaaccccgcttctgtacaattcttatcatccacatcataccaaagaggatcatcaataacacacgatagcatcttcatagcaaccgca |
29332675 |
T |
|
| Q |
109 |
aataccctcttcacttcctccagagaaagattcccaatcacactttccatcgtctccacatccaccgtatcaaactccttgataacaactatcgcctcac |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29332676 |
aataccctcttcacttcctccagagaaagattcccaatcacactttccatcgtctccacatccaccgtatcaaactccttgataacaactatcgcctcac |
29332775 |
T |
|
| Q |
209 |
acatcacctcttcgctcgcagcttctatctccactgcacgaatcatgcaccaaaacacttcacgatgtacccccgcaaagatctttccatcatcatccaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29332776 |
acatcacctcttcgctcgcagcttctatctccactgcacgaatcatgcaccaaaacacttcacgatgtacccccgcaaagatctttccatcatcatccaa |
29332875 |
T |
|
| Q |
309 |
cgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29332876 |
cgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcat |
29332975 |
T |
|
| Q |
409 |
acatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataagtccattccaaga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29332976 |
acatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataagtccattccaaga |
29333075 |
T |
|
| Q |
509 |
tactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccaccggtattaccgttaacaacaaaagccctttctt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333076 |
tactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccaccggtattaccgttaacaacaaaagccctttctt |
29333175 |
T |
|
| Q |
609 |
attttccgattgcacttcactggaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacctatcagcaagtaaa |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333176 |
attttccgattgcacttcactggaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacctatcagcaagtaaa |
29333275 |
T |
|
| Q |
709 |
ccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaagataatagaattga |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333276 |
ccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaagataatagaattga |
29333375 |
T |
|
| Q |
809 |
aaggaccgttaattccttcgggaagaacttgaagaagatgattaacgatttcgattctcgtttgaatcggaggttgaaattctagaagctttgcaagttt |
908 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333376 |
aaggaccgttaattccttcgggaagaacttgaagaagatgattaacggtttcgattctcgtttgaatcggaggttgaaattctagaagctttgcaagttt |
29333475 |
T |
|
| Q |
909 |
caaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttgggaattcgcgtactcgtcgattacttcttgaag |
1008 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
29333476 |
caaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtcctt-ggaattcgcgtactcgtcgattacttcttgaag |
29333574 |
T |
|
| Q |
1009 |
caatgaaagaatcgttggattgaagaatcgtttcgacgttgttgttgaagttcgaagccatggaggagtgat |
1080 |
Q |
| |
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| ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
29333575 |
cgatgaaag-atcgttggattgaagaatcgttgcgacg-tgttgttgaagttcgaagccatggaggagtgat |
29333644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 247 - 489
Target Start/End: Original strand, 29321623 - 29321862
Alignment:
| Q |
247 |
cgaatcatgcaccaaaacacttcacgatgtacccccgcaaagatctttccatcatcatccaacgtaactaaatcgcccaaacgcttaaccctatccacca |
346 |
Q |
| |
|
||||||||||||||||||||||||| | || |||| |||||| ||||||||||| || | || ||||||| | ||||| |||| || || | ||| |
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| T |
29321623 |
cgaatcatgcaccaaaacacttcaccaagtttccccttaaagatatttccatcatc---cagcttagctaaatcccataaacgtttaatccgattcccca |
29321719 |
T |
|
| Q |
347 |
aaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaa |
446 |
Q |
| |
|
|| ||||||||| ||||||| || ||||||| |||||||| ||||||| |||| |||| |||| |||||||||| ||| |||| ||||||||||||||| |
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|
| T |
29321720 |
gaatctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatccttcgacaataacatcaa |
29321819 |
T |
|
| Q |
447 |
cgaaattgatgcattgtatgccaatcccttcaattccttatcc |
489 |
Q |
| |
|
||||| ||||||| || |||||||| | |||||||||| |||| |
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| T |
29321820 |
cgaaagtgatgcagtgaatgccaatgctttcaattcctgatcc |
29321862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 29321411 - 29321516
Alignment:
| Q |
35 |
tacaattcttatcatccacatcataccaaagaggatcatcaataacacacgacagcatcttcatagcaaccgcaaataccctcttcacttcctccagaga |
134 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| || |||||| |||||||||| |||| |
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|
| T |
29321411 |
tacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgttcacagcaaccgtaactacccttctcacttcctcatgaga |
29321510 |
T |
|
| Q |
135 |
aagatt |
140 |
Q |
| |
|
|||||| |
|
|
| T |
29321511 |
aagatt |
29321516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 220 - 489
Target Start/End: Original strand, 29304410 - 29304676
Alignment:
| Q |
220 |
tcgctcgcagcttctatctccactgcacgaatcatgcaccaaaacacttcacgatgtacccccgcaaagatctttccatcatcatccaacgtaactaaat |
319 |
Q |
| |
|
|||||| || |||||| |||| || | ||||||||||||||||||||||||| |||| |||| ||||| |||||||||| ||| ||||||| | |
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|
| T |
29304410 |
tcgctcacatcttctacctccgctactcgaatcatgcaccaaaacacttcaccatgtttccccatgaagatacttccatcatc---caatttaactaatt |
29304506 |
T |
|
| Q |
320 |
cgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcatacatctgttct |
419 |
Q |
| |
|
| | |||||| |||| ||||| ||||| |||||||||||| || |||| |||||| ||| |||| |||||| |||| ||| ||| | |||| || || | |
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|
| T |
29304507 |
cccacaaacgattaatcctattcaccagaacctcttcttctccgtgttgatcgatgatattcaataaattccgcaagagagaattggatacttcattttt |
29304606 |
T |
|
| Q |
420 |
cttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcc |
489 |
Q |
| |
|
| || || | |||||||| ||||| |||||||||| || |||||||| | |||||||||||| |||| |
|
|
| T |
29304607 |
cagaaaatcatttgacaataatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatcc |
29304676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 29304257 - 29304348
Alignment:
| Q |
49 |
tccacatcataccaaagaggatcatcaataacacacgacagcatcttcatagcaaccgcaaataccctcttcacttcctccagagaaagatt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||| || || ||||| ||| || ||||||| |||||| |||||||||| |
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|
| T |
29304257 |
tccacatcataccaaagaggatcatcaacaatacacgacaacatgtttatggcaactacaaggactctcttcaattcctcacgagaaagatt |
29304348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 683 - 766
Target Start/End: Original strand, 29322059 - 29322142
Alignment:
| Q |
683 |
accggtaaaacctatcagcaagtaaaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaat |
766 |
Q |
| |
|
||||||| ||||| ||||| | |||||| ||| ||||||||||||| |||||||||| ||||||||||| |||| ||||||| |
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|
| T |
29322059 |
accggtacaacctgtcagcgaataaacccatcatttcgcatagcgaaggaaacagaatttcttcagattctaccttgagcgaat |
29322142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 29295142 - 29295256
Alignment:
| Q |
22 |
aaccccacttctgtacaattcttatcatccacatcataccaaagaggatcatcaataacacacgacagcatcttcatagcaaccgcaaataccctcttca |
121 |
Q |
| |
|
||||| || ||| |||||||||||||||| ||||||||||||| ||||||||| | |||| |||| ||| | ||| ||| | |||||| ||||||| |
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|
| T |
29295142 |
aacccaacatctttacaattcttatcatcaacatcataccaaacaggatcatccacaacatgtgacatcatatctataataacagaaaatactctcttca |
29295241 |
T |
|
| Q |
122 |
cttcctccagagaaa |
136 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
29295242 |
cttcctccggagaaa |
29295256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 888 - 952
Target Start/End: Original strand, 29296005 - 29296069
Alignment:
| Q |
888 |
ttctagaagctttgcaagtttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaa |
952 |
Q |
| |
|
||||||||| || || || || |||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
29296005 |
ttctagaagtttcgcgagcttgaaagcgaatgcgttagggtaatgatgagcgagggatttgaaaa |
29296069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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