View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4884-Insertion-3 (Length: 913)
Name: NF4884-Insertion-3
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884-Insertion-3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 717; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 8 - 865
Target Start/End: Complemental strand, 12493662 - 12492780
Alignment:
| Q |
8 |
caatgttccatgccttcattatcttcatcacaatatcattgttcagttccattagtgctactatcatactcttttgggcaacacttggattaactgaatt |
107 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12493662 |
caatgttccatgctttcattatcttcatcacaatatcgttgttcagttccattagtgctactatcatactcttttgggcaacacttgggttaactgaatt |
12493563 |
T |
|
| Q |
108 |
ggtaacttttactctcaaaatggtcatgctgcttcttggaatcgctctcatttcgttatctttggctttcatgactggtctttacactgttattagtgaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
12493562 |
ggtaacttttactctcaaaatggtcatgccgcttcttggaatcgctctcatttcgttatctttggctttcatggctagtctttacactgttattagtgaa |
12493463 |
T |
|
| Q |
208 |
cttacttggtt-------------------atggcattgatttttattgcggttgtgattgtgttatatatgctcagtttccttccatcatcgtcaacta |
288 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12493462 |
cttacttggttgtcaaatgtgtctctggttatggcattgatttttattgcggttgtgattgcgttatatatgctcagtttccttccatcatcatcaacta |
12493363 |
T |
|
| Q |
289 |
gcaagccattgcggtacatttctcactacctttatctttttt-ggcatcacgaactgaaagtaaacatgatcatggttgttttgaccaatatgtatgctc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12493362 |
gcaagccattgcggtacatttctcactacctttatctttttttggcatcacgaactgaaagtaaacatgatcatggttgttttgaccaatatgtatgctc |
12493263 |
T |
|
| Q |
388 |
ttttcgtgtgagtgtgaccaataaaatgccaacaaatattaatttatgaataataatacttgttttagaaatgatgta-----taatgataatgctagga |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
12493262 |
ttttcgtgtgagtgtgaccaataaaatgccaacaaatattaatttatgaatagtaatacttgttttagaaatgatgtaatgtataatgataatgctagca |
12493163 |
T |
|
| Q |
483 |
agccattgttcccagaagcaaattacatagttgtttatgttgaatacatactctctctagaacaccctcttcttactatggttaatcaacagtggaaggt |
582 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12493162 |
agccattgttcccataagcaaattacatagttgtttatgttgaatacatactctctctagaacaccctcttcttactatggttaatcaacagtggagggt |
12493063 |
T |
|
| Q |
583 |
gtgaaactaagttgaattttcaggatgtaatcaattccatggagaaagagggagagaaaggtgagtttgagtttggtgcttatgttggtagcataagcat |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12493062 |
gtgaaactaagttgaattttcaggatgtaatcaattccatggagaaagagggagagaaaggtgagtttgagtttggtgcttatgttggtagcgtaagcat |
12492963 |
T |
|
| Q |
683 |
gatgtgggaggaggtggttgttagttgatatttatctcttcaatccaactgattgacatactactaacactattatcagggcaaatccgccttcggaggc |
782 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
12492962 |
gatgtgggaggaggtggctgttagttgatatttatctcttcaatccaactgattgacttactgctaacactattatcagggcaactccgccttcagaggc |
12492863 |
T |
|
| Q |
783 |
cattttcggccaccataacgtcaaattatgaagtaacaccaaatcaaactccttctcatttcatctataaaaattcgtgaatg |
865 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12492862 |
cattttcggccaccataacgtcaaattatgaagtaacaccaaatcaaactccttctcatttcatctacaaaaattcgtgaatg |
12492780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-105; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 36956162 - 36956534
Alignment:
| Q |
8 |
caatgttccatgccttcattatcttcatcacaatatcattgttcagttccattagtgctactatcatactcttttgggcaacacttggattaactgaatt |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36956162 |
caatgttccatgttttcattatcttcatcacaatatcattgttcagttcaattagtgctaccatcatactcttttgggcaacacttggattaactgaatt |
36956261 |
T |
|
| Q |
108 |
ggtaacttttactctcaaaatggtcatgctgcttcttggaatcgctctcatttcgttatctttggctttcatgactggtctttacactgttattagtgaa |
207 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
36956262 |
ggtaacttttactctcaaaattgttgtgccgcttcttggaatcgctctcatttcattatcttttgctttcattgctggtctgtacactgttattagtgaa |
36956361 |
T |
|
| Q |
208 |
cttact-------------------tggttatggcattgatttttattgcggttgtgattgtgttatatatgctcagtttccttccatcatcgtcaacta |
288 |
Q |
| |
|
|||| | |||||||||| |||||||| |||||||||||||| | ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
36956362 |
cttaattggttggcaaatgtgtttctggttatggctctgatttttgttgcggttgtgatttttttatatatgcttcttttccttccatcatcatcaacta |
36956461 |
T |
|
| Q |
289 |
gcaagccattgcggtacatttctcactacctttatctttt-ttggcatcacgaactgaaagtaaacatgatca |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
36956462 |
gcaagccattgcggtacatttctcactacccttttcttttcttggcatcacaaactgaaagtaaacctgatca |
36956534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 36935307 - 36935680
Alignment:
| Q |
7 |
acaatgttccatgccttcattatcttcatcacaatatcattgttcagttccattagtgctactatcatactcttttgggcaacacttggattaactgaat |
106 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
36935307 |
acaatgtttcatgctttcattatcttcatcacagtatcattgttcagttccattagtgctaccatcatactcttttgggcaacatttgggttaactgaat |
36935406 |
T |
|
| Q |
107 |
tggtaacttttactctcaaaatggtcatgctgcttcttggaatcgctctcatttcgttatctttggctttcatgactggtctttacactgttattagtga |
206 |
Q |
| |
|
|| | ||||| |||||||||| || |||| |||||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
36935407 |
tgctgactttacctctcaaaatcgttatgccgcttcttggaatcgctcttattgcattatctttggctttcatggctggtctctacactgttatcagtga |
36935506 |
T |
|
| Q |
207 |
acttacttggtt-------------------atggcattgatttttattgcggttgtgattgtgttatatatgctcagtttccttccatcatcgtcaact |
287 |
Q |
| |
|
||| | |||| |||||| |||||||| | || ||||||||| |||||||| |||| ||||||||||||| | |||||| |
|
|
| T |
36935507 |
actacgtcggttgtccaatgtgtttctggttatggcactgatttttgtcgccgttgtgattttgttatatgtgcttcttttccttccatcaccatcaact |
36935606 |
T |
|
| Q |
288 |
agcaagccattgcggtacatttctcactacctttatc-ttttttggcatcacgaactgaaagtaaacatgatca |
360 |
Q |
| |
|
||||| || ||||||||||||||||| || | |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36935607 |
agcaaccccttgcggtacatttctcattatccatatctttttttggcatcacgaactgaaagtaaacctgatca |
36935680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 37069873 - 37069663
Alignment:
| Q |
8 |
caatgttccatgccttcattatcttcatcacaatatcattgttcagttccattagtgctactatcatactcttttgggcaacacttggattaactgaatt |
107 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
37069873 |
caatgttccaagctttcattatcttcatcacaatatcattgttcagttccattagttctactatcatactctttttggcaaaacttggattaactgaatt |
37069774 |
T |
|
| Q |
108 |
ggtaacttttactctcaaaatggtcatgctgcttcttggaatcgctctcatttcgttatctttggctttcatgactggtctttacactgttattagtgaa |
207 |
Q |
| |
|
||| ||||| | || ||||| || ||| |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
37069773 |
ggtgactttctcactgaaaatcgtgttgccacttcttggaaccgctctcatttctctatctttggctttcatgactggtctctacactgttatcagtgaa |
37069674 |
T |
|
| Q |
208 |
cttacttggtt |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
37069673 |
cttacttggtt |
37069663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 36948086 - 36948407
Alignment:
| Q |
8 |
caatgttccatgccttcattatcttcatcacaatatcattgttcagttccattagtgctactatcatactcttttgggcaacacttggattaactgaatt |
107 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36948086 |
caatgtttcaagcattcattatcttcatcacaatatcattattcagttccattagttctattatcatactcttttgggcaacacttggattaactgaatt |
36948185 |
T |
|
| Q |
108 |
ggtaacttttactctcaaaatggtcatgctgcttcttggaatcgctctcatttcgttatctttggctttcatgactggtctttacactgttattagtgaa |
207 |
Q |
| |
|
||| | || |||| ||||| || |||| ||||||||||||||||||| || | |||||||||||||| |||| || ||||||||||| |||||| |
|
|
| T |
36948186 |
ggtgaaattctctctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaa |
36948285 |
T |
|
| Q |
208 |
cttact-------------------tggttatggcattgatttttattgcggttgtgattgtgttatatatgctcagtttccttccatcatcgtcaacta |
288 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||| ||||| |||| | |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
36948286 |
cttacttggttggcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaacta |
36948385 |
T |
|
| Q |
289 |
gcaagccattgcggtacatttc |
310 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
36948386 |
gcataccattgcggtacatttc |
36948407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 37079633 - 37079423
Alignment:
| Q |
8 |
caatgttccatgccttcattatcttcatcacaatatcattgttcagttccattagtgctactatcatactcttttgggcaacacttggattaactgaatt |
107 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
37079633 |
caatgttccatgttttcattatattcatcacaatatcattgttcagttccattagttctactatcatactcttttgggcaaagcttggaatacctgaatt |
37079534 |
T |
|
| Q |
108 |
ggtaacttttactctcaaaatggtcatgctgcttcttggaatcgctctcatttcgttatctttggctttcatgactggtctttacactgttattagtgaa |
207 |
Q |
| |
|
||| ||||| |||| ||||| || |||| |||||||||||||||||| | || ||||||||||||| ||| |||| || ||||||||||| |||||| |
|
|
| T |
37079533 |
ggtgactttctctctgaaaattgtgatgccacttcttggaatcgctctcgtctcactatctttggcttttatggctggactctacactgttatcagtgaa |
37079434 |
T |
|
| Q |
208 |
cttacttggtt |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
37079433 |
cttacttggtt |
37079423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 36956665 - 36956717
Alignment:
| Q |
399 |
gtgtgaccaataaaatgccaacaaatattaatttatgaataataatacttgtt |
451 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36956665 |
gtgtgactaataaaatgccaacaaatattaatttatgaataataatacttgtt |
36956717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 47304244 - 47304297
Alignment:
| Q |
499 |
agcaaattacatagttgtttatgttgaatacatactctctctagaacaccctct |
552 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||| ||| |||||||||||| |
|
|
| T |
47304244 |
agcaaattcaatagttgtttctgttgaatacagactcgctccagaacaccctct |
47304297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University