View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4884-Insertion-5 (Length: 173)

Name: NF4884-Insertion-5
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4884-Insertion-5
NF4884-Insertion-5
[»] chr2 (7 HSPs)
chr2 (8-173)||(2329762-2329927)
chr2 (14-173)||(2326053-2326212)
chr2 (54-173)||(2292919-2293038)
chr2 (54-173)||(2320239-2320358)
chr2 (14-173)||(2302498-2302657)
chr2 (54-173)||(2309250-2309369)
chr2 (12-173)||(2350066-2350227)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 4e-89; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 4e-89
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 2329762 - 2329927
Alignment:
Q  8 caagaaaaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaacctttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329762 caagaaaaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaacctttt 2329861  T
Q  108 ctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccatt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329862 ctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccatt 2329927  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 2326053 - 2326212
Alignment:
Q  14 aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga 113  Q
    |||||||| | ||||||| ||  | |||||||| || || |||||||||||||| |||||||| |||||||||||  |||| |||||||||||||||| |    
T  2326053 aaccaccgtacccctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa 2326152  T
Q  114 actcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccatt 173  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  2326153 actctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatt 2326212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 2292919 - 2293038
Alignment:
Q  54 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 153  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | |  |||    
T  2292919 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata 2293018  T
Q  154 tcggttctcgaccttccatt 173  Q
    ||||||||||||||||||||    
T  2293019 tcggttctcgaccttccatt 2293038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 2320239 - 2320358
Alignment:
Q  54 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 153  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | |  |||    
T  2320239 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata 2320338  T
Q  154 tcggttctcgaccttccatt 173  Q
    ||||||||||||||||||||    
T  2320339 tcggttctcgaccttccatt 2320358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 2302498 - 2302657
Alignment:
Q  14 aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga 113  Q
    |||||||| | || |||| ||||| || ||||| || || ||| |||||| ||| || | ||| |||||| ||| | |||| |||||||||||||||| |    
T  2302498 aaccaccgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaa 2302597  T
Q  114 actcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccatt 173  Q
    ||||| ||||||||||||||||||||||||| |||  | |||||||||||||||||||||    
T  2302598 actctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt 2302657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 2309250 - 2309369
Alignment:
Q  54 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 153  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | |  |||    
T  2309250 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccata 2309349  T
Q  154 tcggttctcgaccttccatt 173  Q
    ||||||||| ||||||||||    
T  2309350 tcggttctcaaccttccatt 2309369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 2350066 - 2350227
Alignment:
Q  12 aaaaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctca 111  Q
    |||||||||||||||||||| || |||||||| ||||| || || |||||||| |||| |||||| ||||||||||   |||| || ||||||||| |||    
T  2350066 aaaaccaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatca 2350165  T
Q  112 gaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccatt 173  Q
     ||| || ||  ||||| ||||||||||||||| ||| || ||| |||  ||||||||||||    
T  2350166 aaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccatt 2350227  T

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