View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4884-Insertion-6 (Length: 335)
Name: NF4884-Insertion-6
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 51588264 - 51587947
Alignment:
| Q |
7 |
aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggacccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca |
105 |
Q |
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| T |
51588264 |
aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatggagtctacgacgatggataggggcgaaaacattgatgtaatca |
51588165 |
T |
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| Q |
106 |
acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct |
205 |
Q |
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| T |
51588164 |
acggcggaggataggtgagagagat--------agagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct |
51588073 |
T |
|
| Q |
206 |
gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat |
305 |
Q |
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| T |
51588072 |
gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtggtggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat |
51587973 |
T |
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| Q |
306 |
tgtcgtttgtgaagtagtagaaacaa |
331 |
Q |
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| T |
51587972 |
tgtcgtttgtgaagtagtagaaacaa |
51587947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 40224938 - 40225133
Alignment:
| Q |
7 |
aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggacccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca |
105 |
Q |
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| T |
40224938 |
aagagcgacatcagcaatggagtgatacttctgcatctgaaggatttggatccaatggagtctccgacgatggatagcggcgaaaacattgctgtaatca |
40225037 |
T |
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| Q |
106 |
acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtct |
201 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40225038 |
gcggcggaggagaggtgagagagatgagaacagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtct |
40225133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 40225173 - 40225234
Alignment:
| Q |
205 |
tgaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgg |
266 |
Q |
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| T |
40225173 |
tgaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttgg |
40225234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 40225299 - 40225350
Alignment:
| Q |
259 |
gatgttgggaagaacaaagatcttaggtcgaaatctggctttagaattgtcg |
310 |
Q |
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| T |
40225299 |
gatgtcgggaagaacaatgatgttggttcgaaatctggctttagaattgtcg |
40225350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 37511752 - 37511795
Alignment:
| Q |
154 |
gcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgc |
197 |
Q |
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| T |
37511752 |
gcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgc |
37511795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 18106802 - 18106862
Alignment:
| Q |
206 |
gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgg |
266 |
Q |
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||||||| | |||||||||||| |||| |||||||||||||| | ||||| ||| |||||| |
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| T |
18106802 |
gaagaggagcggttgtgggacccacaatggtaggtcgatcggaggtggtggttgttgttgg |
18106862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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