View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4884-Insertion-7 (Length: 298)
Name: NF4884-Insertion-7
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884-Insertion-7 |
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| [»] chr5 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 16464872 - 16465160
Alignment:
| Q |
10 |
tagaaggcacaaacgagtggaatcacacatataatcttttttgagctagatcgacatactcgtgtagactcgcgagtctatgatgagtttatgagtctaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16464872 |
tagaaggcacaaacgagtggaatcacacatataatcttttttgagctagatcgacatactcgtgtagactcgcgagtctatgatgagtttatgagtctaa |
16464971 |
T |
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| Q |
110 |
gttttattgaaaaaacaatttgtttctgaaaagagctcaaactaaacaaaatttgaaaggaaacaaacttataatccttttaatttctttttctatctca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16464972 |
gttttattgaaaaaacaatttgtttctgaaaagagctcaaactaaacaaaatttgaaaggaaacaaacttataatccttttaatttctttttcgatctca |
16465071 |
T |
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| Q |
210 |
ctctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactcaccttcgctgacgacattttcttcttcc |
298 |
Q |
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| T |
16465072 |
ctctcaatttagaaacaaatctctcactttcaccaaagatacaagaattcaggtcatactcaccttcgctgacgacattttcttcttcc |
16465160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 16471819 - 16472114
Alignment:
| Q |
10 |
tagaaggcacaaacgagtggaatcacacatataatcttttttgagctaga-tcgac-atactcgtgtagactcgcgagtctatgatgagtttatgagtct |
107 |
Q |
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|||||||||||| ||||||||| | |||| ||| |||||||||||||| ||| | ||||| |||||||| |||| ||||||||||||| ||||| |
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| T |
16471819 |
tagaaggcacaactaagtggaatcgcgcatagaatattttttgagctagactcgtgtagactcgcatagactcgtgagtttatgatgagtttacaagtct |
16471918 |
T |
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| Q |
108 |
a--agttttattgaaaaaacaatttgtttctgaaaaga-gctcaaactaaacaaaatttgaaaggaaacaaacttat----aatccttttaatttctttt |
200 |
Q |
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| |||||| ||||||||||||||||||| |||||| | ||||||||||||||||| || |||||||| ||||||| |||||| |||||||||||| |
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| T |
16471919 |
atgagtttttttgaaaaaacaatttgtttttgaaaaaaagctcaaactaaacaaaaatttaaaggaaaaaaacttacttagaatcctcttaatttctttt |
16472018 |
T |
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| Q |
201 |
tctatctcactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactcaccttcgctgacgacattttcttctt |
296 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |||||||| ||| ||||| |
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| T |
16472019 |
tcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcacctacgttgacgacaattttttctt |
16472114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 1683921 - 1684007
Alignment:
| Q |
204 |
atctcactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactcaccttcgctgacgacatttt |
290 |
Q |
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|||||||||||| |||||||||| | ||| || | |||||||| ||||||||||||||||| || |||||||| | |||||||||| |
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| T |
1683921 |
atctcactctcagtttagaaacataactcacattctcaccaaatatagaagaattcaggtcgtattcaccttcaccaacgacatttt |
1684007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 24179661 - 24179604
Alignment:
| Q |
208 |
cactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtca |
265 |
Q |
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|||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
24179661 |
cactttcaatttagaaacaaaactctcaccctcaccaaagatagaagaattaaggtca |
24179604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 260
Target Start/End: Complemental strand, 12261747 - 12261627
Alignment:
| Q |
138 |
aaaagagctcaaactaaacaaaatttgaaaggaaacaaact-tataatccttttaatttctttttctatctcactctcaatttagaaacaaatctctcac |
236 |
Q |
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|||| |||||||| ||||||||||||||||||||| ||| | || ||||||||| ||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
12261747 |
aaaaaagctcaaattaaacaaaatttgaaaggaaataaaatctagaatcctttt---ttctttttcgatttcactctcaatttagaaacaaaactctcac |
12261651 |
T |
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| Q |
237 |
tttcaccaaagatagaagaattca |
260 |
Q |
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| |||| |||||||||||||||| |
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| T |
12261650 |
tctcactcaagatagaagaattca |
12261627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 37205062 - 37205167
Alignment:
| Q |
193 |
tttctttttctatctcactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactcaccttcgctgacgacattttct |
292 |
Q |
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|||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| |||| ||||| ||| ||||||||||||| |
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| T |
37205062 |
tttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattcaagtcacgctcacattcttcgacgacattttct |
37205161 |
T |
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| Q |
293 |
tcttcc |
298 |
Q |
| |
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||||| |
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| T |
37205162 |
ccttcc |
37205167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 10254090 - 10253993
Alignment:
| Q |
197 |
tttttctatctcactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactcaccttcgctgacgacattttcttctt |
296 |
Q |
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|||||| |||||||||||| | | ||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||| |
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| T |
10254090 |
tttttcgatctcactctcatctaataaacaaaactctcactttgaccaaagatagaagaatttaggtca----caccttcgtcgacgacattttcttctt |
10253995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 26586267 - 26586357
Alignment:
| Q |
143 |
agctcaaactaaacaaaatttgaaagg-aaacaaacttataatccttttaatttctttttctatctcactctcaatttagaaacaaatctctcac |
236 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| || | ||||| | ||||||| |||||||||||||||||||||||| ||||||| |
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| T |
26586267 |
agctcaaactaaacaaaatttgaaaggaaaaaaaacctagagtcctt----tatcttttttgctctcactctcaatttagaaacaaaactctcac |
26586357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 7848003 - 7848121
Alignment:
| Q |
138 |
aaaagagctcaaactaaacaaaatttgaaaggaaacaaa-cttataatccttttaatttctttttctatctcactctcaatttagaaacaaatctctcac |
236 |
Q |
| |
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|||| ||||| ||||||||||||| |||||||||| ||| | || |||||| || || |||||| ||||||||||| ||||||||||||| |||||| |
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| T |
7848003 |
aaaaaagctccaactaaacaaaatatgaaaggaaaaaaaacctaaaatcctctt---ttatttttcgatctcactctccatttagaaacaaaattctcac |
7848099 |
T |
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| Q |
237 |
tttcaccaaagatagaagaatt |
258 |
Q |
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| |||| ||||||||||||||| |
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| T |
7848100 |
tctcacgaaagatagaagaatt |
7848121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 52418192 - 52418101
Alignment:
| Q |
146 |
tcaaactaaacaaaatttgaaagga---aacaaacttataatccttttaatttctttttctatctcactctcaatttagaaacaaatctctcact |
237 |
Q |
| |
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||||||||||||||||||||||||| || ||||||| |||||| || ||||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
52418192 |
tcaaactaaacaaaatttgaaaggagaaaaaaaacttagaatcctctt---ttctttttcgatctcactctcaatttaaaaacaaaactctcact |
52418101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 5050157 - 5050223
Alignment:
| Q |
205 |
tctcactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactca |
271 |
Q |
| |
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|||||||||||||||| ||| | | |||||||| |||| ||||||||||||||| |||||| ||||| |
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| T |
5050157 |
tctcactctcaatttaaaaaaacaactctcactctcactaaagatagaagaattaaggtcacactca |
5050223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 25052780 - 25052714
Alignment:
| Q |
206 |
ctcactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactcac |
272 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| ||| ||||||||||||||||||||| || ||||| |
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|
| T |
25052780 |
ctcactctcaatttagaaacgatcctcccactctcatcaaagatagaagaattcaggttatgctcac |
25052714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 36455600 - 36455501
Alignment:
| Q |
193 |
tttctttttctatctcactctcaatttagaaacaaatctctcactttcaccaaagatagaagaattcaggtcatactcaccttcgctgacgacattttct |
292 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||| | ||||||||| | |||||||||| |
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| T |
36455600 |
tttctttttcgatctcactctcaatttagaaataaaactctctat------gaagatagaagaattcaagtcacattcaccttcgtcaatgacattttct |
36455507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 190440 - 190396
Alignment:
| Q |
193 |
tttctttttctatctcactctcaatttagaaacaaatctctcact |
237 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||| || ||||| |
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|
| T |
190440 |
tttctttttcgatctcattctcaatttagaaacaaaactttcact |
190396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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