View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4884-Insertion-8 (Length: 261)
Name: NF4884-Insertion-8
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 34534877 - 34534735
Alignment:
| Q |
7 |
acatacaaagtaggttggtgaagatcagatcagatcaagattcagatcactatgtatgtgtaaaaatttatatattttgtttattaagtttcagacaaac |
106 |
Q |
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| T |
34534877 |
acatacaaagtaggttggtgaagatcagatcagatcaagattcagatcactatgtatgtgtaaaaatttatatattttgtttattaagtttcagacaaaa |
34534778 |
T |
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| Q |
107 |
cccacatgcatgctacagcaagcacttacaagcaaagtgttcc |
149 |
Q |
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| T |
34534777 |
cccacatgcatgctacagcaagcacttacaagcaaagtgttcc |
34534735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 34534663 - 34534623
Alignment:
| Q |
221 |
cacctattcggagatcagggagcagcctttaacacaagttg |
261 |
Q |
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| T |
34534663 |
cacctattcggagatcagggagcagcctttaacacaagttg |
34534623 |
T |
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