View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4884_high_4 (Length: 366)
Name: NF4884_high_4
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 96 - 350
Target Start/End: Original strand, 24369920 - 24370175
Alignment:
| Q |
96 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgaggtc-ggtttggtttcttgattttcttttc |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
24369920 |
atggcttaatcggaagaaggctagacaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttc |
24370019 |
T |
|
| Q |
195 |
aagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttaga |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24370020 |
aagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggccaaaggatgttaga |
24370119 |
T |
|
| Q |
295 |
gctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24370120 |
gctcaggaagttgctcaaaatttcatctcatgcaatccatttttcacaattctcat |
24370175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 24358699 - 24358873
Alignment:
| Q |
192 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgtt |
291 |
Q |
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||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
24358699 |
ttcaagagtttcttctttgatttacattgcacgcatatatgcaggtgatgatgagaagactactaaaagaacttcatcaataaattggccaaaggatgtt |
24358798 |
T |
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| Q |
292 |
agagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcataaaacctaaccatata |
366 |
Q |
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||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24358799 |
agagctcagaaagtagctcaaaatttcatctcaaacaatccttttttcacaattctcataaaacctaaccatata |
24358873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 24364541 - 24364401
Alignment:
| Q |
213 |
ttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgctcaa |
312 |
Q |
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||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| || ||||| ||| ||| ||||||||||||||| |||||| |
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| T |
24364541 |
ttacattgcacacatatatgcaggagatcatgagaagactactaaaagaacttcatcaataaactggccgaagaatgctagagctcaggaagtagctcaa |
24364442 |
T |
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| Q |
313 |
aatttcatctcatgcaatccttttttcacaattctcataaa |
353 |
Q |
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||||||||||||||||||||||| || ||| |||||||||| |
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| T |
24364441 |
aatttcatctcatgcaatcctttctttacagttctcataaa |
24364401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 24358564 - 24358664
Alignment:
| Q |
96 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgagg-tcggtttggtttcttgattttcttttc |
194 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
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| T |
24358564 |
atggcttaattggaagaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttc |
24358663 |
T |
|
| Q |
195 |
a |
195 |
Q |
| |
|
| |
|
|
| T |
24358664 |
a |
24358664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 24364727 - 24364627
Alignment:
| Q |
96 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgagg-tcggtttggtttcttgattttcttttc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
24364727 |
atggcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttc |
24364628 |
T |
|
| Q |
195 |
a |
195 |
Q |
| |
|
| |
|
|
| T |
24364627 |
a |
24364627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 359
Target Start/End: Original strand, 24355617 - 24355762
Alignment:
| Q |
209 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaa-aggatgttagagctcaggaagttg |
307 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | |||| ||| ||||||||||||||||| |||||||| |||| | ||||||||||||||| | |
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| T |
24355617 |
tgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatca-----ttggccaagagga-gctagagctcaggaagtag |
24355710 |
T |
|
| Q |
308 |
ctcaaaatttcatctcatgcaatccttttttcacaattctcataaaacctaa |
359 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
24355711 |
ctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagcctaa |
24355762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 359
Target Start/End: Original strand, 24362479 - 24362629
Alignment:
| Q |
209 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgc |
308 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||||| || |||||||| ||||| | |||||||| | || | |||||||| ||||| || |
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| T |
24362479 |
tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcctatgggagctagagctcgagaagtagc |
24362578 |
T |
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| Q |
309 |
tcaaaatttcatctcatgcaatccttttttcacaattctcataaaacctaa |
359 |
Q |
| |
|
| ||| ||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
24362579 |
tgcaaaattcatctcaagcaatccttttttcacaattctcataaagcctaa |
24362629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 24354902 - 24354974
Alignment:
| Q |
96 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgaggt |
168 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
24354902 |
atggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt |
24354974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 358
Target Start/End: Original strand, 24346558 - 24346659
Alignment:
| Q |
257 |
aaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcataaaacc |
356 |
Q |
| |
|
|||||||| ||||| ||||||||||||| | ||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||| || |
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| T |
24346558 |
aaagaactacatcatggaattggccaaagggagctagagctcaggaagtagctttaaaattcatctcaaccaatccttttttcacaattctcataaaccc |
24346657 |
T |
|
| Q |
357 |
ta |
358 |
Q |
| |
|
|| |
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|
| T |
24346658 |
ta |
24346659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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