View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4884_high_6 (Length: 347)
Name: NF4884_high_6
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 29332246 - 29332579
Alignment:
| Q |
16 |
agaaatcatgcaaaactttgcagtgaacgagcagaacctgtggaagtatctattgaatttacatgacatgattgctctttctacaaggtaatgcatgatc |
115 |
Q |
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| T |
29332246 |
agaaatcatgcaaaactttgaagtgtcccatcagaatctgttgaagtatctattgaatttacatgacatgattgctctttctacaaggtaatgcatgatc |
29332345 |
T |
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| Q |
116 |
aagaaaacact--atggatttaaagctcattgaatatcatatcgaattatacgtaccatcccgttgaggtttttctctgcaattgaagcaatggcaagca |
213 |
Q |
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| T |
29332346 |
aagaaaacactttatggatttaaagctcattgaatatcatatcgaattatacataccatctcgttgaggtttttctctgcaattgaagcaatggcaagca |
29332445 |
T |
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| Q |
214 |
tagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatcccaattgcagtgggaacaaacacatattcatccccatctaaaga |
313 |
Q |
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| T |
29332446 |
tagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatcccaattgcagtgggaacaaacacatattcatccccatctaaaga |
29332545 |
T |
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| Q |
314 |
gaggcaattgaacaagaactgtccatgatagaaa |
347 |
Q |
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| T |
29332546 |
gaggaaattgaacaagaactgtccacgatggaaa |
29332579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 316
Target Start/End: Original strand, 29303948 - 29304189
Alignment:
| Q |
76 |
acatgacatgattgctctttctacaaggtaatgcatgatcaagaaaacactatgga-tttaaagctcattgaatatcatatcgaattatacgtac-catc |
173 |
Q |
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| T |
29303948 |
acatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaacaattgagagttcaaagctcattcaatatcatat-gtcatatagatacatacc |
29304046 |
T |
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| Q |
174 |
ccgttgaggtttttctctgcaattgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatcccaa |
273 |
Q |
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| T |
29304047 |
cctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcatgacgaagcttccaatcaagatttgatgcataattcattgttattgtctcaa |
29304146 |
T |
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| Q |
274 |
ttgcagtgggaacaaacacatattcatccccatctaaagagag |
316 |
Q |
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| T |
29304147 |
ttgccatgggaacaaacacaccttgatccccatcaaaacagag |
29304189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 308
Target Start/End: Original strand, 29321203 - 29321349
Alignment:
| Q |
162 |
atacgtaccatcccgttgaggtttttctctgcaattgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttg |
261 |
Q |
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| T |
29321203 |
atacataccttccctttgatgttactctctgcaatccaactaatggcaagcattgctgcacaacggaaccaccaataaacatgagatacatattgcattg |
29321302 |
T |
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| Q |
262 |
ttatcatcccaattgcagtgggaacaaacacatattcatccccatct |
308 |
Q |
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| T |
29321303 |
tcatcatctcaattgccgtgggaacaaaaacatcttcatgcccatct |
29321349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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