View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4884_high_9 (Length: 326)
Name: NF4884_high_9
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4884_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 21703218 - 21703533
Alignment:
| Q |
11 |
cagagatctcgaaaatgagagggaggatctgatttctgaacgagataacttgttgtgtcgagttaaacaagccaaagaaagaactgaaattattgagaag |
110 |
Q |
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| T |
21703218 |
cagagatctcgaaaatgagagggaggatctgatttctgaacgagataacttgttgtgtcgagttaaacaagccaaagaaagaactgaaattattgagaag |
21703317 |
T |
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| Q |
111 |
cccgtggaaaagtggctagatgaagtgaagagtctgttagaagaggtggaagcattgaaacaaaggacgagaacaaacaccaggtgctttcaaagagatt |
210 |
Q |
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| T |
21703318 |
cccgtggaaaagtggctagatgaagtgaagagtctgttagaagaggtggaagcattgaaacaaaggatgagaacaaacaccaggtgctttcaaagagatt |
21703417 |
T |
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| Q |
211 |
ttccaacatggagaagatatcgtttgagcaagcaaatggtaacgaaggcagaggcaattaaaagattaaaagcaaaaagcaatattcaaccattttctca |
310 |
Q |
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| T |
21703418 |
ttccaacatggagaagatatcgtttgagcaagcaaatggtaaagaaggcacaggcaatggaaagattaaaaggaaaaagcaatattcaaccattttctca |
21703517 |
T |
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| Q |
311 |
cttagctcctcttcca |
326 |
Q |
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| T |
21703518 |
cttagctcctcttcca |
21703533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 54 - 326
Target Start/End: Complemental strand, 21716251 - 21715979
Alignment:
| Q |
54 |
gataacttgttgtgtcgagttaaacaagccaaagaaagaactgaaattattgagaagcccgtggaaaagtggctagatgaagtgaagagtctgttagaag |
153 |
Q |
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| T |
21716251 |
gataacttgttggatcgagttgaacaagccaagcaaagaactgaaattatcgagaaacctgtggaaaagtggctacatgatgtgcagagcctactagaag |
21716152 |
T |
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| Q |
154 |
aggtggaagcattgaaacaaaggacgagaacaaacaccaggtgctttcaaagagattttccaacatggagaagatatcgtttgagcaagcaaatggtaac |
253 |
Q |
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| T |
21716151 |
aggtggaagaattagaacaaaggatgagagcaaacaccagttgctttcgaggagaatttccagcatggagaagatatcgtatcagacggaaaatggtaaa |
21716052 |
T |
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| Q |
254 |
gaaggcagaggcaattaaaagattaaaagcaaaaagcaatattcaaccattttctcacttagctcctcttcca |
326 |
Q |
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| T |
21716051 |
gaagggagaggcattgggaaaattaagatgcaaaagtgatattcaaccattttctcattatgctcctcttcca |
21715979 |
T |
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