View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4884_low_1 (Length: 362)

Name: NF4884_low_1
Description: NF4884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4884_low_1
NF4884_low_1
[»] scaffold0045 (1 HSPs)
scaffold0045 (50-346)||(74391-74687)


Alignment Details
Target: scaffold0045 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 50 - 346
Target Start/End: Original strand, 74391 - 74687
Alignment:
Q  50 gacgtcgttttctcaccaatccttcaaccatacaatcaaacgcgcgattctagacgccgcgcaaattcccctccgccgttcacattaaccaacatcctct 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  74391 gacgtcgttttctcaccaatccttcaaccatacaatcaaacgcgcgattctcgacgccgcgcaaattcccctccgccgttcacattaaccaccatcctct 74490  T
Q  150 ccgccgcgatctcatggctccgacaccgacggatccgtttcatcttccttctcctctgttctcctctcctctttatcgtccttttcatcgctttcccttt 249  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  74491 ccgccgcgatctcatggctccgaaaccgacggatccgtttcatcttccttctcctctgttctcctctcatctttatcttccttttcatcgctttcccttt 74590  T
Q  250 cctatgcataaccgaaatctgcctccgacgtcgtttgtggagaaagcttcttcgtggtttctccggtgatgattccgccgatcggcttcgaagatgt 346  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  74591 cctatgcatcaccgaaatctgcctccgacgccgtttatggagaaaacttcttcgtggattctccggtgatgattccgccgatcggcttcgaagatgt 74687  T

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