View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-1 (Length: 1095)
Name: NF4885-Insertion-1
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 62 - 592
Target Start/End: Original strand, 1233869 - 1234409
Alignment:
| Q |
62 |
tgattcaaactcgctctcggatcggggacaatgatacttaacgatgtcagcatcaattcgcttcaagtgattaaggttaagagaaagtgaatacaacgtt |
161 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1233869 |
tgattcaaactcgctctcggattggggacaatgatacttaacgatgtcagcatcaattcgcttcaagtgattaaggttaagagaaagtgaatacaacgtt |
1233968 |
T |
|
| Q |
162 |
gctaccgaaagcgagttgaagtcttgatcataaattagcagcccgattgtaaaataaaaatagtagcatgtgaagggaataagttttagtaacagtcatg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1233969 |
gctaccgaaagcgagttgaagtcttgatcataaattagcaacccgattgtaaaataaaaatagtagcatgtgaagggaataagttttagtaacagtcatg |
1234068 |
T |
|
| Q |
262 |
tgtgcagatagcatcccatctttcactcaatggaataaattgaaagatgccttccttgatgaaattataaagatttgaaggatgttgtcttcatctttca |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1234069 |
tgtgcagatagcatcccatctttcactcaatggaataaattgaaagatgccttccttgatgaaattataaagatttgaaggatgttgtcttcatctttca |
1234168 |
T |
|
| Q |
362 |
tgtcttataaatttcagtttggaaataattctagaaatagtgatgaagcatgtcatatatatgcttggatgaaataactacaaataattattcataatta |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1234169 |
tgtcttataaatttcagtttggaaataattctagaaatagtgatgaagcatgtcatatatatgcttggataaaataactacaaataattattcataatta |
1234268 |
T |
|
| Q |
462 |
tcttagattcttggtcactgccattttgacgcttaattaacggcttaagtcataaaatatgtgtagatgggtgtgtgtg----------tatatatatac |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
1234269 |
tcttagattcttggtcactgccattttgacgcttaattaacggcttaagtcataaaatatgtttagatgggtgtgtgtgtgtatatatatatatatatat |
1234368 |
T |
|
| Q |
552 |
attaaaaggataaggatagattaagattattagatatatgt |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
1234369 |
attaaaaggataaggatagattaagattattagatatatgt |
1234409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 587 - 782
Target Start/End: Original strand, 1235019 - 1235215
Alignment:
| Q |
587 |
atatgtatgtaggacagcaatgactgaaagagcaaatactcacaaaatgatgctgggcagaagtcccacatcgagaaaccaagaaaataacttaatagat |
686 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1235019 |
atatgtatgtaggacagcaatgactgaaagagcaaatactcacaaaatgatgctgggcagaagtcccacatcgagaaaccaagaaaataacttaatagat |
1235118 |
T |
|
| Q |
687 |
actagatataaaacaaacaatgggtcgaacgttcaattcatacaatataa-ccattagggctaaattacaaagagtatagtaataatttcctaaaat |
782 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1235119 |
actagatataaaacaaacaatgggtcgaacgttcaattcatacaatataagccattagggctaaattacaaagagtatagtaataatttcctaaaat |
1235215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 810 - 886
Target Start/End: Original strand, 1235254 - 1235330
Alignment:
| Q |
810 |
agcaaaacttcagaatatgtatcttgaacataccatctatccaagttatttaaacatatcatttagacactcacaca |
886 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
1235254 |
agcaaaacttcagaatatgtatcttgaacataccatctatccgagttatttaaacatattatttagacactcacaca |
1235330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 987 - 1070
Target Start/End: Original strand, 1235434 - 1235522
Alignment:
| Q |
987 |
attaaatattttcctaaat-caat-gcatagtctatg-tcacattggatagcacttgagtg--aatggggtgtcaatgtcatgtaatat |
1070 |
Q |
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||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
1235434 |
attaaatattttcctaaattcaattgcatagtctatggtcacattggatagcacttgagtgatattggggtgtcaatgtcatgtaatat |
1235522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 321 - 392
Target Start/End: Original strand, 1232458 - 1232530
Alignment:
| Q |
321 |
tgaaattataaagatttgaaggatgttgtcttcatctttcatgtcttataaatttca-gtttggaaataattc |
392 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
1232458 |
tgaaattataaagatttgaagtatgatgtcttcatcttttatgtcttacaaatttcaggtttggaaataattc |
1232530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 1233000 - 1233050
Alignment:
| Q |
7 |
agttttttccctgtaaagtgtaaaccattcattggctagtcactctggata |
57 |
Q |
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| T |
1233000 |
agttttttccctgtagagtgtaaaccattcattggctagtcactctggata |
1233050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 323 - 429
Target Start/End: Original strand, 1242841 - 1242945
Alignment:
| Q |
323 |
aaattataaagatttgaaggatgttgtcttcatctttcatgtcttataaatttca-gtttggaaataattctagaaatagtgatgaagcatgtcatatat |
421 |
Q |
| |
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||||||||||||||||||| || |||| |||||||||||| |||||||||||||| |||||||||||||| | || || | ||||||||| |||||| |
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| T |
1242841 |
aaattataaagatttgaagtattttgttttcatctttcatttcttataaatttcacttttggaaataattcaacaagtattcatgaagcat---atatat |
1242937 |
T |
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| Q |
422 |
atgcttgg |
429 |
Q |
| |
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|||||||| |
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| T |
1242938 |
atgcttgg |
1242945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 1248575 - 1248623
Alignment:
| Q |
552 |
attaaaaggataaggatagattaagattattagatatatgtatgtagga |
600 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1248575 |
attaaaaggataaggatacattaagattattagatatatgtatgtagga |
1248623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 1251583 - 1251658
Alignment:
| Q |
323 |
aaattataaagatttgaaggatgttgtcttcatctttcatgtcttataaatttcagtttggaaataattctagaaa |
398 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||||| ||||| |||||||||||| |||||| ||| ||||| |
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| T |
1251583 |
aaattataaagatttcaagtatgttttcttcatctttcatttcttacaaatttcagttttgaaatatttcaagaaa |
1251658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 1244123 - 1244185
Alignment:
| Q |
358 |
ttcatgtcttataaatttcag-tttggaaataattctagaaatagtgatgaagcatgtcatat |
419 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
1244123 |
ttcatgtcttacaaatttcaggtttggaaataattctagaaatattgatgaggcatgtcatat |
1244185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 1241962 - 1242013
Alignment:
| Q |
341 |
ggatgttgtcttcatctttcatgtcttataaatttca-gtttggaaataatt |
391 |
Q |
| |
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||||||||| |||||||||||||||||| |||||| | |||||||||||||| |
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| T |
1241962 |
ggatgttgttttcatctttcatgtcttacaaatttaacgtttggaaataatt |
1242013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 218 - 473
Target Start/End: Original strand, 13814078 - 13814338
Alignment:
| Q |
218 |
aaaatagtagcatgtgaagggaataagttttagtaacagtcatgtgtgcagatagcatccca-tctttcactcaatggaataaattgaaagatgccttcc |
316 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||||||||| || |||||||||||| |||||| ||||||| |||||||||||||||||||||| |
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|
| T |
13814078 |
aaaatagtagtatgtgaacggaagaagttttagtaacagtcatgtttgaagatagcatccccgtctttctctcaatgaaataaattgaaagatgccttcc |
13814177 |
T |
|
| Q |
317 |
ttgatgaaattataaagatttgaaggatgttgtcttcatctttcatgtcttataaatttcagtttggaaataattctagaaatagtgatgaagca---tg |
413 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||| |||| |||||||||| || ||| | |||||||| || |
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|
| T |
13814178 |
ttgatgaaattataaagatttgaagtatgttgtctacatcttgcatgtcttacaaatttctgttttgaaataattccagtcatattcatgaagcatattg |
13814277 |
T |
|
| Q |
414 |
tcatat-atatgcttggatgaaataactacaaataattattcataattatcttagattctt |
473 |
Q |
| |
|
|||||| ||||| |||||| |||||||| |||| | | |||||||||||||||||||| |
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|
| T |
13814278 |
tcatataatatgtttggataaaataacttaaaatcaccgtacataattatcttagattctt |
13814338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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