View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-12 (Length: 377)
Name: NF4885-Insertion-12
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-12 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 24400535 - 24400902
Alignment:
| Q |
7 |
aaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctcaattaggatggattggagggccactt |
106 |
Q |
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| T |
24400535 |
aaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctcaattaggatggattggagggccactt |
24400634 |
T |
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| Q |
107 |
gccttgttttcttgtgcaatagctacctatatttcttcatcccttttggctgattgttacagacatcctgattcggtaactgggaaaagaaaccactctt |
206 |
Q |
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| T |
24400635 |
gccttgttttcttgtgcaatagctacctatatttcttcatcccttttggctgattgttacagacatcctgattctgtaactgggaaaagaaaccactctt |
24400734 |
T |
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| Q |
207 |
ttatggatgctgttagagtcaatcttggtaataacacattacactcttcactatgtccaatcactctagacaacatagatatgtttttcatgaactgcta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24400735 |
ttatggatgctgttagagtcaatcttggtaataacatattacactcttcactatgtccaatcactctagccaacatagatatgtttttcatgaactgcta |
24400834 |
T |
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| Q |
307 |
acaactataacttcaaattgtgtttaatgttgttggttcaggtaataaaaggacctatgtggctggtttcc |
377 |
Q |
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| T |
24400835 |
acaactataacttcaaattgtgtttaa---tgttggttaaggtaataaaaggacctatgtggctggtttcc |
24400902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 24377703 - 24377979
Alignment:
| Q |
18 |
tggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctcaattaggatggattggagggccacttgccttgttttc |
117 |
Q |
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| T |
24377703 |
tggctcatatcatcactggtgttatcgggtctggtgttttgtcattggcatggagtactgctcaactaggatggattggagggccacttgcattactttc |
24377802 |
T |
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| Q |
118 |
ttgtgcaatagctacctatatttcttcatcccttttggctgattgttacagacatcctgattcggtaactgggaaaagaaaccactcttttatggatgct |
217 |
Q |
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| T |
24377803 |
ttgtgcaatagctacctatgtttcttcattccttttggctgattgttacagacatcctgactctgtaaatgggaaaagaaactactcttttatggatgct |
24377902 |
T |
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| Q |
218 |
gttagagtcaatcttggtaataacacattacactcttcactatgtccaatcactctagacaacatagatatgttttt |
294 |
Q |
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| T |
24377903 |
gttagagtcaatcttggtaattaaacataacattcttcaccttgtttaatcactctacccaacatatatatgttttt |
24377979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 24412988 - 24413214
Alignment:
| Q |
11 |
agtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctcaattaggatggattggagggccacttgcct |
110 |
Q |
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| T |
24412988 |
agtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggattggaggaccagttacct |
24413087 |
T |
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| Q |
111 |
tgttttcttgtgcaatagctacctatatttcttcatcccttttggctgattgttacagacatcctgattcggtaactgggaaaagaaaccactcttttat |
210 |
Q |
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| T |
24413088 |
tgctttgttgtgcaatagttacttatatttcttcattccttttatctgattgttacagaaatcctgattcggtaactgggaaaaggaactactcttacat |
24413187 |
T |
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| Q |
211 |
ggatgctgttagagtcaatcttggtaa |
237 |
Q |
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| T |
24413188 |
ggatgctgttagagttaatcttggtaa |
24413214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 24421053 - 24420827
Alignment:
| Q |
11 |
agtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctcaattaggatggattggagggccacttgcct |
110 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||| ||| || ||| |
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| T |
24421053 |
agtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggattggaggaccagttacct |
24420954 |
T |
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| Q |
111 |
tgttttcttgtgcaatagctacctatatttcttcatcccttttggctgattgttacagacatcctgattcggtaactgggaaaagaaaccactcttttat |
210 |
Q |
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| T |
24420953 |
tgctttgttgtgcaatagttacttatatttcttcattccttttatccgattgttacagaaatcctgattcggtaactgggaaaaggaactactcttacat |
24420854 |
T |
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| Q |
211 |
ggatgctgttagagtcaatcttggtaa |
237 |
Q |
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| T |
24420853 |
ggatgctgttagagttaatcttggtaa |
24420827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 24413310 - 24413344
Alignment:
| Q |
343 |
ttcaggtaataaaaggacctatgtggctggtttcc |
377 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
24413310 |
ttcaggtaataaaaggacatatgtggctggtttcc |
24413344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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