View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-14 (Length: 43)
Name: NF4885-Insertion-14
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-14 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 37; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 3819492 - 3819456
Alignment:
| Q |
7 |
aatacatccaatgcgacatcaccgatccaaacgacgc |
43 |
Q |
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| T |
3819492 |
aatacatccaatgcgacatcaccgatccaaacgacgc |
3819456 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 47338385 - 47338421
Alignment:
| Q |
7 |
aatacatccaatgcgacatcaccgatccaaacgacgc |
43 |
Q |
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| T |
47338385 |
aatacatccaatgcgacatcaccgatccaaacgacgc |
47338421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 47346855 - 47346888
Alignment:
| Q |
7 |
aatacatccaatgcgacatcaccgatccaaacga |
40 |
Q |
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| T |
47346855 |
aatacatccaatgcgacatcaccgatccaaacga |
47346888 |
T |
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